PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028095059.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 416aa MW: 47195.3 Da PI: 4.9372

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028095059.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	2.9e-12	207	258	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ XP_028095059.1 207 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 258 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MDKEENYSAA LPGNFPELDY SIDHHQHQHQ HLMMKPRIGE TSGDNSNQMV DYMLNNPQPQ 60 HMPSGFCSST SPDKLSFADV MQFADFGPKL GLNQTKISEE ETAIDPVYFL KFPVLNDKLQ 120 DDEPLMIPQD VEDNEDRFKG LSVESSKARE IEQEGEREDE EARGSENASV ELRFLGENLR 180 KSPVTEVMKN KRKRPRTIKT SEEVESQRMT HIAVERNRRK QMNEHLRVLR SLMPGSYVQR 240 GDQASIIGGA IEFVRELEQL LQCLESQKRR RLYGDPPPRP PTGDSSSLAI PQPQPPLYPP 300 VSIPNDQLKL MEFESGLQEE IAESKSCLAD VEVKMLGFDA MIKILSRRRP GQLIKTIAAL 360 EDLQLNILHT NITTIEQTVL YSFNVKVGSE ARFTAEDIAS SVQQIFSFIH ANSTTI

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MDKEENYSAA LPGNFPELDY SIDHHQHQHQ HLMMKPRIGE TSGDNSNQMV DYMLNNPQPQ  60
HMPSGFCSST SPDKLSFADV MQFADFGPKL GLNQTKISEE ETAIDPVYFL KFPVLNDKLQ  120
DDEPLMIPQD VEDNEDRFKG LSVESSKARE IEQEGEREDE EARGSENASV ELRFLGENLR  180
KSPVTEVMKN KRKRPRTIKT SEEVESQRMT HIAVERNRRK QMNEHLRVLR SLMPGSYVQR  240
GDQASIIGGA IEFVRELEQL LQCLESQKRR RLYGDPPPRP PTGDSSSLAI PQPQPPLYPP  300
VSIPNDQLKL MEFESGLQEE IAESKSCLAD VEVKMLGFDA MIKILSRRRP GQLIKTIAAL  360
EDLQLNILHT NITTIEQTVL YSFNVKVGSE ARFTAEDIAS SVQQIFSFIH ANSTTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	208	219	RMTHIAVERNRR
2	268	272	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-132	bHLH family protein