PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028095058.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 419aa MW: 47602.9 Da PI: 5.07

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028095058.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	2.9e-12	210	261	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ XP_028095058.1 210 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 261 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MVFYSKPEFF QAALPGNFPE LDYSIDHHQH QHQHLMMKPR IGETSGDNSN QMVDYMLNNP 60 QPQHMPSGFC SSTSPDKLSF ADVMQFADFG PKLGLNQTKI SEEETAIDPV YFLKFPVLND 120 KLQDDEPLMI PQDVEDNEDR FKGLSVESSK AREIEQEGER EDEEARGSEN ASVELRFLGE 180 NLRKSPVTEV MKNKRKRPRT IKTSEEVESQ RMTHIAVERN RRKQMNEHLR VLRSLMPGSY 240 VQRGDQASII GGAIEFVREL EQLLQCLESQ KRRRLYGDPP PRPPTGDSSS LAIPQPQPPL 300 YPPVSIPNDQ LKLMEFESGL QEEIAESKSC LADVEVKMLG FDAMIKILSR RRPGQLIKTI 360 AALEDLQLNI LHTNITTIEQ TVLYSFNVKV GSEARFTAED IASSVQQIFS FIHANSTTI

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MVFYSKPEFF QAALPGNFPE LDYSIDHHQH QHQHLMMKPR IGETSGDNSN QMVDYMLNNP  60
QPQHMPSGFC SSTSPDKLSF ADVMQFADFG PKLGLNQTKI SEEETAIDPV YFLKFPVLND  120
KLQDDEPLMI PQDVEDNEDR FKGLSVESSK AREIEQEGER EDEEARGSEN ASVELRFLGE  180
NLRKSPVTEV MKNKRKRPRT IKTSEEVESQ RMTHIAVERN RRKQMNEHLR VLRSLMPGSY  240
VQRGDQASII GGAIEFVREL EQLLQCLESQ KRRRLYGDPP PRPPTGDSSS LAIPQPQPPL  300
YPPVSIPNDQ LKLMEFESGL QEEIAESKSC LADVEVKMLG FDAMIKILSR RRPGQLIKTI  360
AALEDLQLNI LHTNITTIEQ TVLYSFNVKV GSEARFTAED IASSVQQIFS FIHANSTTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	222	RMTHIAVERNRR
2	271	275	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-132	bHLH family protein