PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028094623.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24324.9 Da    PI: 9.8032
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028094623.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.14e-221557244
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    r +n+s r+vtfskRr g++KKA+EL++LC+ae+a+++fs+  
  XP_028094623.1 15 RMSNESHRSVTFSKRRSGLFKKASELCTLCGAEIAIVVFSPGK 57
                    689*************************************965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MERKSKGRQK IPMTRMSNES HRSVTFSKRR SGLFKKASEL CTLCGAEIAI VVFSPGKRAF  60
SFGHPCVDTV VDCFLSRNSL PNSGSLQLVK AHCNANVSKL NLQLTEALDM LEAEKKRGEE  120
LNKMRKASRD RCWWEAPVSE LGLQQLEQLK VAMEDLKKNV AKQSEKIRME ESNPWRFFEA  180
GSSSMGGHVG GASHDVNVSG LGLSMTPHGY TLGYGHGFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-61M-type_MADS family protein