PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028094517.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MYB
Protein Properties Length: 281aa    MW: 30747.8 Da    PI: 7.7762
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028094517.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.55.5e-121155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT e d+ + +a + +  +   +W++Ia++++ g+t +++k+++q
   XP_028094517.1 11 SWTREQDKAFENALAIYSEDssdRWEKIAAMVP-GKTIEEIKHHYQ 55
                     7********************************.***********9 PP
2Myb_DNA-binding452.5e-14109153347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++ + +++G+g+W++I+r++   Rt+ q+ s+ qky
   XP_028094517.1 109 AWSEEEHRLFLLGLEKYGKGDWRSISRHFVVSRTPTQVASHAQKY 153
                      6*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MSTSQTCYGS SWTREQDKAF ENALAIYSED SSDRWEKIAA MVPGKTIEEI KHHYQILVED  60
INAIESGYVP LPHYVDSTSR GGNFGQIQSD SCHGGKSSRS DQERRRGIAW SEEEHRLFLL  120
GLEKYGKGDW RSISRHFVVS RTPTQVASHA QKYFIRLNSA NKGRRRSSIH DITTVGGGDS  180
STSQGPITGQ TDGTATSGSS SRRGKPAPST EPDFSTYVPP TIVQSIDSSP LISTIGNSVD  240
HPYPAEMVYG VKALTPGSFE SGAPTNVSSK TFQRPHSSDQ K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-90MYB family protein