PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028094501.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 578aa MW: 63037.3 Da PI: 8.9339

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028094501.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H XP_028094501.1 71 FVCEVCNKGFQREQNLQLHRRGH 93 89*******************88 PP
2	zf-C2H2	15.1	6.7e-05	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k + +s+ k H +t+ XP_028094501.1 147 YKCEKCSKKYAVQSDWKAHTKTC 169 9********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence
MAASSSSAAF FGMREEDQNP MKQQHSAAPT SSAGATTVPP QKKRRNQPGT PYPDAEVIAL 60 SPKTLMATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK QKTTKEVKRK VYLCPEPTCV 120 HHDPSRALGD LTGIKKHYSR KHGEKKYKCE KCSKKYAVQS DWKAHTKTCG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAQ ESARHPPSLS TIGSHLYGTS NMSLGLSSPM GHQISPLQDQ 240 NQPPTDILRL GGVRGGQFDN LIXISLSYDL QPSMSSPFFM TEPNQDYQED TQSQHGLLSN 300 KPFHQGLLQL PDLQNNTNAG VINLGFFSNS SNNNTTSIEN NNNNTNSSFL VPNQFNNGHS 360 SSSIMGNQIS SGINSLYSSS LQNNNVASHM SATALLQKAA QMGSTTSNSS ASLLRGFGSS 420 SSSGNRPDRS PIAANFGGVF GDNSNETHLQ DLMNSLAGAN SNIFGSGNAF VGAHEQDQNS 480 FGGYNNANKP SLEQTQTHHN SSSFGNMDQS KLQNNNNLSV SVGGSDRLTR DFLGVGEIVR 540 SMSGGFSQRE QIEMSSLESE RKAAPKSQQA FGDGNFHQ

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence

MAASSSSAAF FGMREEDQNP MKQQHSAAPT SSAGATTVPP QKKRRNQPGT PYPDAEVIAL  60
SPKTLMATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK QKTTKEVKRK VYLCPEPTCV  120
HHDPSRALGD LTGIKKHYSR KHGEKKYKCE KCSKKYAVQS DWKAHTKTCG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAQ ESARHPPSLS TIGSHLYGTS NMSLGLSSPM GHQISPLQDQ  240
NQPPTDILRL GGVRGGQFDN LIXISLSYDL QPSMSSPFFM TEPNQDYQED TQSQHGLLSN  300
KPFHQGLLQL PDLQNNTNAG VINLGFFSNS SNNNTTSIEN NNNNTNSSFL VPNQFNNGHS  360
SSSIMGNQIS SGINSLYSSS LQNNNVASHM SATALLQKAA QMGSTTSNSS ASLLRGFGSS  420
SSSGNRPDRS PIAANFGGVF GDNSNETHLQ DLMNSLAGAN SNIFGSGNAF VGAHEQDQNS  480
FGGYNNANKP SLEQTQTHHN SSSFGNMDQS KLQNNNNLSV SVGGSDRLTR DFLGVGEIVR  540
SMSGGFSQRE QIEMSSLESE RKAAPKSQQA FGDGNFHQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-109	C2H2 family protein