PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028094352.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 526aa    MW: 59120.3 Da    PI: 6.2384
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028094352.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS457.67.5e-1401565261374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++ L++cA+avs++d+   q+l+a+l++++s +g+p+qRl ay++e+L arla+s+s +yk+l+++e +   s++ l+++++++ev+P++kf++
  XP_028094352.1 156 LKQILIACAKAVSENDMLTSQWLMAELRQMVSVSGEPIQRLGAYMLEGLVARLASSGSLIYKSLRCKEPA---STDLLSYMHILYEVCPYFKFGY 247
                     5789*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   ++ +g+rL+++A++++vpfef+  +a +  +
  XP_028094352.1 248 MSANGAIAEAMKDENRVHIIDFQIAQGSQWVTLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGMNIVGHRLTRLAKSFKVPFEFHG-AAMSGCE 341
                     ******************************************************998899999************************.89999** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +ele+L ++pgEalaVn++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F+ rfleal+yy+a+f+s++++lpre++eri
  XP_028094352.1 342 VELENLGIRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLEALDYYTAMFESIDVTLPREHKERI 436
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+r++vnv+aceg+er+erhe l+kW++r+++aGFkp+pls+ +++++k+ll ++  d yr+ee++g+l+lgW++r Lv+ +aW+
  XP_028094352.1 437 NVEQHCLARDVVNVIACEGTERVERHELLGKWKSRFRMAGFKPYPLSSLVNATIKTLLVNYC-DKYRLEERDGALYLGWMKRDLVASCAWE 526
                     *************************************************************9.55*************************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    
MQSSQQHTRS VMSNALYYEP MQDVEAYSLP QCQALDHQLC YSNSSHGSHS LIQTSLEKYC  60
TLESSSPTSC YTVYNSPSTA SFSPDGSPMS QQDNNYGSPV SGSCVTDDVN EFRYKLRELE  120
TVMLGPDSDK LDSYEIASPK IESWRQMMEA IPKRDLKQIL IACAKAVSEN DMLTSQWLMA  180
ELRQMVSVSG EPIQRLGAYM LEGLVARLAS SGSLIYKSLR CKEPASTDLL SYMHILYEVC  240
PYFKFGYMSA NGAIAEAMKD ENRVHIIDFQ IAQGSQWVTL IQAFAARPGG PPHIRITGID  300
DSTSAYARGG GMNIVGHRLT RLAKSFKVPF EFHGAAMSGC EVELENLGIR PGEALAVNFA  360
FMLHHMPDES VSTQNHRDRL LRLVKSLSPK VVTLVEQESN TNTAAFFPRF LEALDYYTAM  420
FESIDVTLPR EHKERINVEQ HCLARDVVNV IACEGTERVE RHELLGKWKS RFRMAGFKPY  480
PLSSLVNATI KTLLVNYCDK YRLEERDGAL YLGWMKRDLV ASCAWE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein