PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028094337.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 219aa MW: 24326.9 Da PI: 9.5934 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.1 | 4e-22 | 15 | 57 | 2 | 44 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 r +n+s r+vtfskRr g++KKA+EL++LC+ae+a+++fs+ XP_028094337.1 15 RMSNESHRSVTFSKRRSGLFKKASELCTLCGAEIAIVVFSPGK 57 689*************************************965 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MERKGKGRQK IAMTRMSNES HRSVTFSKRR SGLFKKASEL CTLCGAEIAI VVFSPGKRAF 60 SFGHPCVDTV VDCFLSRNSL PNSGSLQLVK AHCNANVSKL NLQLTEALDM LEAEKKRGEE 120 LNKMRKASRD RCWWEAPVSE LGLQQLEQLK VAMEDLKKNV AKQSEKIRME ESNPWRFFEA 180 GSSSMGGHVG GASHDVNVSG LGLSMTPHGY TLDYGHGFF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-60 | M-type_MADS family protein |