PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028093547.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

FAR1

Protein Properties

Length: 405aa MW: 47412.7 Da PI: 5.6582

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028093547.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.9	2.2e-25	41	129	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYneY++ vGFs+r+++ +ksk++g +t+r+fvC+keg+re++k+ + +++r+etrt+ ka ++++ ++ kw v+k++++HnH+l XP_028093547.1 41 EFYNEYGRIVGFSIRRDYCNKSKKDGVMTSRKFVCYKEGEREKDKRY-TMIKNPRSETRTNSKAFMHISFKReLLKWIVSKFDNNHNHPL 129 6*****************************************999.99***************998789***********99 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MEDSIIDDGG LEGCIEEMGE LAKDKSPYLG MEFPSEEAVY EFYNEYGRIV GFSIRRDYCN 60 KSKKDGVMTS RKFVCYKEGE REKDKRYTMI KNPRSETRTN SKAFMHISFK RELLKWIVSK 120 FDNNHNHPLH LPQCTHLMPS QRKVYDAQGI NIDIADETEI SLKASHDLIS AIAGAKEFVG 180 FTREDQKTYL RAKRQRNLQY GEAGSLLRYF QQQVAENPYF YYAIQLDVDE MITNIFWADH 240 QMITDYGLFG DAVSFDTTFR TNKEYCPLAL FSGFNHFRMI VIFGAALLYD ETAESFEWLF 300 ETFLDAMSGK KPVSFFTDQD QAMAKAISQI MPEVFYGLCT FHLMQNALKH LGYLFKSGSK 360 FSSDLKACIY DYENEHELIE AWNSLIDKYN LQENEWMKRT WRKRE

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MEDSIIDDGG LEGCIEEMGE LAKDKSPYLG MEFPSEEAVY EFYNEYGRIV GFSIRRDYCN  60
KSKKDGVMTS RKFVCYKEGE REKDKRYTMI KNPRSETRTN SKAFMHISFK RELLKWIVSK  120
FDNNHNHPLH LPQCTHLMPS QRKVYDAQGI NIDIADETEI SLKASHDLIS AIAGAKEFVG  180
FTREDQKTYL RAKRQRNLQY GEAGSLLRYF QQQVAENPYF YYAIQLDVDE MITNIFWADH  240
QMITDYGLFG DAVSFDTTFR TNKEYCPLAL FSGFNHFRMI VIFGAALLYD ETAESFEWLF  300
ETFLDAMSGK KPVSFFTDQD QAMAKAISQI MPEVFYGLCT FHLMQNALKH LGYLFKSGSK  360
FSSDLKACIY DYENEHELIE AWNSLIDKYN LQENEWMKRT WRKRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-83	FAR1 family protein