PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028093404.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 219aa MW: 24310 Da PI: 10.0546 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72 | 5.1e-23 | 15 | 59 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 r +n+snr vtfskRr g++KKA+EL++LC+ae+a+i+fs+ k XP_028093404.1 15 RMSNESNRMVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKA 59 789*************************************97765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MERKGKGRQK IAMTRMSNES NRMVTFSKRR SGLFKKASEL CTLCGAEIAI IVFSPGKKAF 60 SFGHPCVDTV VDCFLSRNSL PNSSSLQLVK ARCNANVSKL NLQLTEALDM LEAEKKRGEE 120 LNKMRKASRD KCWWEAPVSE LGLQQLEQLK VAMEDLKKNV AKQSEKIQME ESNPSRFFEA 180 GSSSMGGRVG GTSDGVKVSG LRLSMTPHGY TLDYGHGFF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-56 | M-type_MADS family protein |