PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028093401.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 273aa    MW: 30377.1 Da    PI: 9.9802
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028093401.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.57.3e-2369113246
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 
                     r +n+snr vtfskRr g++KKA+EL++LC+ae+a+i+fs+  k 
  XP_028093401.1  69 RMSNESNRMVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKA 113
                     789*************************************97765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MPLHRQNDSL HCLADKHGLF TLKPLISHCH LALGEDSNNC KLLWRSIAPP KVKSMERKGK  60
GRQKIAMTRM SNESNRMVTF SKRRSGLFKK ASELCTLCGA EIAIIVFSPG KKAFSFGHPC  120
VDTVVDCFLS RNSLPNSSSL QLVKARCNAN VSKLNLQLTE ALDMLEAEKK RGEELNKMRK  180
ASRDKCWWEA PVSELGLQQL EQLKVAMEDL KKNVAKQSEK IQMEESNPSR FFEAGSSSMG  240
GRVGGTSDGV KVSGLRLSMT PHGYTLDYGH GFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-55M-type_MADS family protein