PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028093152.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 686aa    MW: 75545.5 Da    PI: 5.5986
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028093152.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.61.3e-903276853374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     ++L ++Ae + +g+++ aq +Larl+++ sp  +p+qR+++yf+eA +  l          ++p++ ++ + + ++ a+kl+sevsP+++f ++t
  XP_028093152.1 327 HQLCKAAELILAGNFSHAQGILARLNHQLSPVSKPFQRATFYFKEAVQLSLIP-----NPVVTPRTPTPFDGIFKMGAYKLLSEVSPLIQFMNFT 416
                     89**************************************************9.....4445777777778************************ PP

            GRAS  98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      Nqa+l+a++ + +rvH+iDfdi+ G+QW++++q+L  +  +g+psl+iT+++sp++++  el  ++e+L++fA+e+gv+fe +v+   +++ ++
  XP_028093152.1 417 SNQALLDALDDDtRRVHVIDFDIGFGAQWASFMQELPGKCsRGTPSLKITAFASPSTHHPLELGLMHENLTQFANEIGVNFELEVV---NFDGFD 508
                     **********9989***********************66559*******************************************8...777777 PP

            GRAS 191 leeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     +++ +v      +Ea++Vn+ +   +     +s     +++L+++k+lsPkv+v +e   ++ + +  +++l a++yy  l+ds++a   ++se+
  XP_028093152.1 509 PNSYSVPIfrssDEAIVVNFPIWACSNR---LS---VLPSLLRFIKQLSPKVIVSMECGFERADLPISHHLLLAIQYYEILLDSIDAV-NANSET 596
                     777665444468********99443332...23...3558*********************************************887.7999** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++k+E++l++++i+++v+ +         ++ +Wr+ + +aGF pv++s++a++qa+++lr+ +++g++ve++++sl+l+W++r+L++ S+Wr
  XP_028093152.1 597 MNKIEKFLVQPRIESIVSGRLHG----PDHMPHWRDLFAAAGFAPVAFSNFAETQAECVLRRSQVRGFHVEKHQASLTLCWQRRQLMTGSVWR 685
                     *****************988777....8899*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    
MIRMQYNLKE KGVLEVGDFD SEAKWKKKEG SFASNEPISV LDTRRSPSPS TSTSTLSSSL  60
GGGGVGSSSG STDNTASLAA VSGNNLWPPE RGPADLAAAC GGRKDEWASE LQPIPVGLEV  120
SGGERFGLGL EDWESLLSES GQDQSLLRWI SSEVDDGSFS LKQLLQSSNP NELDGNVIPA  180
VIDQSSGFKN DDNSVKILGP NNVNLQIPNL GPSLSNLLPN GVVYQQQQQL QNPDEKLQIF  240
NPQLFINSNN QINQSQNLFT PPLYAQQQDP LRLLQPHPKR QNLGVFDPGL EFLLRQQLPP  300
LPPLTVPKQE AAAAGGDQTP PPPPPHHQLC KAAELILAGN FSHAQGILAR LNHQLSPVSK  360
PFQRATFYFK EAVQLSLIPN PVVTPRTPTP FDGIFKMGAY KLLSEVSPLI QFMNFTSNQA  420
LLDALDDDTR RVHVIDFDIG FGAQWASFMQ ELPGKCSRGT PSLKITAFAS PSTHHPLELG  480
LMHENLTQFA NEIGVNFELE VVNFDGFDPN SYSVPIFRSS DEAIVVNFPI WACSNRLSVL  540
PSLLRFIKQL SPKVIVSMEC GFERADLPIS HHLLLAIQYY EILLDSIDAV NANSETMNKI  600
EKFLVQPRIE SIVSGRLHGP DHMPHWRDLF AAAGFAPVAF SNFAETQAEC VLRRSQVRGF  660
HVEKHQASLT LCWQRRQLMT GSVWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.18e-96GRAS family protein