PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028093112.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 430aa    MW: 46947.7 Da    PI: 8.7398
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028093112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.8e-075979526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    +C+ f++ GtC+ Gd C +aHg
  XP_028093112.1 59 PCPEFRK-GTCRQGDACEYAHG 79
                    8******.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    
MIQLSNRHNI GTDEFRMYTF KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC  60
PEFRKGTCRQ GDACEYAHGI FECWLHPAQY RTRLCKDETG CSRRVCFFAH KPEELRPLYA  120
STGSAVPSPR SFSNGAPSLD MTSMSMLGHG SPLLMPPTST PPMTPSGASS PMGGSMSMWQ  180
NQHNIVPPTL QLPGSRLKSS WSARDMDLDA ELLGLESHRR RQQQQLMDEM SSLSSPTSWN  240
CNLATAAAFA ASSFDRSGDF NRLGGVKPTN LDDVFGSIDP AILPQFQGLS LDASASQAQS  300
PTGMQMRQNM NQQLRSTYPT SLSSSPARAS SSMGIDPSGA SAAAAVLSSR AAAFAKRSQS  360
FIDRSTVNHL SGLPLPASSA NVMPSNLSDW GSPDGKLDWG IQKDELNKLR KSASFGYRSN  420
SSKSLVNDAP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-104C3H family protein