PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028093089.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 230aa MW: 25911.6 Da PI: 9.2195 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.8 | 6.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr+g++KKA+ELS+LCdae+a+i+fs tgkl+e+ss XP_028093089.1 9 KKIDNVTSRQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSATGKLFEFSS 59 68***********************************************96 PP | |||||||
2 | K-box | 45.8 | 2.7e-16 | 100 | 170 | 27 | 98 |
K-box 27 eienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++ e+R+l Ge+L+ L+ +eL++Le+ Le +l+++ ++K e++ ++i +ke +l een L++k+ XP_028093089.1 100 VNKKIH-ELRQLRGEELQGLDAEELKNLEKSLEGGLSRVLKTKGEIMEKEITARERKEARLVEENVWLKQKV 170 444554.56************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MVRQRIQIKK IDNVTSRQVT FSKRRKGLFK KAQELSTLCD AEIALIVFSA TGKLFEFSSS 60 SMRQVIERHN LESGNLVNLN QPSLEQQLEN SGCTILSKEV NKKIHELRQL RGEELQGLDA 120 EELKNLEKSL EGGLSRVLKT KGEIMEKEIT ARERKEARLV EENVWLKQKV PMEIVKIGQT 180 HDDQQGQSAE FITNNGSSAA PPQDNGSSDT SLKLGLPFPE LNLRARMINA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-83 | MIKC_MADS family protein |