PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028093088.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 282aa MW: 31777.6 Da PI: 9.8072 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.3 | 8.5e-28 | 61 | 111 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr+g++KKA+ELS+LCdae+a+i+fs tgkl+e+ss XP_028093088.1 61 KKIDNVTSRQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSATGKLFEFSS 111 68***********************************************96 PP | |||||||
2 | K-box | 45.3 | 3.7e-16 | 152 | 222 | 27 | 98 |
K-box 27 eienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++ e+R+l Ge+L+ L+ +eL++Le+ Le +l+++ ++K e++ ++i +ke +l een L++k+ XP_028093088.1 152 VNKKIH-ELRQLRGEELQGLDAEELKNLEKSLEGGLSRVLKTKGEIMEKEITARERKEARLVEENVWLKQKV 222 444554.56************************************************************997 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 282 aa Download sequence |
MLPLIIIPIS ISPTFSLHFS IFRLLFSLHK PSVDSTFVDF VFKGFALNFP GKMVRQRIQI 60 KKIDNVTSRQ VTFSKRRKGL FKKAQELSTL CDAEIALIVF SATGKLFEFS SSSMRQVIER 120 HNLESGNLVN LNQPSLEQQL ENSGCTILSK EVNKKIHELR QLRGEELQGL DAEELKNLEK 180 SLEGGLSRVL KTKGEIMEKE ITARERKEAR LVEENVWLKQ KVPMEIVKIG QTHDDQQGQS 240 AEFITNNGSS AAPPQDNGSS DTSLKLGLPF PELNLRARMI NA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-82 | MIKC_MADS family protein |