PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028092752.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 733aa MW: 79868.4 Da PI: 6.2867

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028092752.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.4e-07	316	336	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_028092752.1 316 PCPDFRK-GACRRGDMCEYAHG 336 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence
MCCGLERLKP KLDLIPSSLS SSPFSFYKSK PTNIDMNNLT VETEDTFGSL LDFAANNDVE 60 GFKRYIEHDL SGIDDVGLWY GRRKGSKQMV LEPRTPLMVA ATYGSIDIVK LIISFSDVDV 120 DVNRPCGHDK ITALHCAASG GSVSAVDVVK LLLDAGADPN LIDANGHCPV DVIVVPPKFQ 180 ELKFALEELL ATNGSVGERN PRVSIATSNS NSPPLSPSPD NRSLSSGSDS TSSPKSSKFN 240 DVFVSSASEK KEYPIDPSLP DIKNSIYSTN EFRMFSFKVR PCSRAYSHDW TECPFVHPGE 300 NARRRDPRKY HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTSCNR 360 RVCFFAHTQE ELRPLYVSTG SAVPSPRSGS AATNGMDFAA AMNLLPGSPS SVMSPVPFTP 420 PMSPSANGIS NMGWPQPNVP ALHLPGSNFQ SSRLRSSLNA RDIAAEGLDL LPDFDVQQQL 480 LNELSRLSQP GNSLNRSAHS KTLTPSNLED LFSAESSSSP RYSDQALASA VFSPTHKSMV 540 LNQFQQQQKS MVSPINTNFS PKTIDHPLLQ ASFGGRMSPR SVEPISPMGS RVSMLAQREK 600 QQQQFRSLSS RDLGSNSASI VGSPGDSWLK WGSANGKADW TVNADEFGRL RRSSSFELGS 660 NGEEEPDLSW VQSLVKESPQ EMKERPAAPV LGGVDGSGSS GEGSNSNSQI EPTDQSVLGA 720 WLEQMQIDQL MAQ

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence

MCCGLERLKP KLDLIPSSLS SSPFSFYKSK PTNIDMNNLT VETEDTFGSL LDFAANNDVE  60
GFKRYIEHDL SGIDDVGLWY GRRKGSKQMV LEPRTPLMVA ATYGSIDIVK LIISFSDVDV  120
DVNRPCGHDK ITALHCAASG GSVSAVDVVK LLLDAGADPN LIDANGHCPV DVIVVPPKFQ  180
ELKFALEELL ATNGSVGERN PRVSIATSNS NSPPLSPSPD NRSLSSGSDS TSSPKSSKFN  240
DVFVSSASEK KEYPIDPSLP DIKNSIYSTN EFRMFSFKVR PCSRAYSHDW TECPFVHPGE  300
NARRRDPRKY HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTSCNR  360
RVCFFAHTQE ELRPLYVSTG SAVPSPRSGS AATNGMDFAA AMNLLPGSPS SVMSPVPFTP  420
PMSPSANGIS NMGWPQPNVP ALHLPGSNFQ SSRLRSSLNA RDIAAEGLDL LPDFDVQQQL  480
LNELSRLSQP GNSLNRSAHS KTLTPSNLED LFSAESSSSP RYSDQALASA VFSPTHKSMV  540
LNQFQQQQKS MVSPINTNFS PKTIDHPLLQ ASFGGRMSPR SVEPISPMGS RVSMLAQREK  600
QQQQFRSLSS RDLGSNSASI VGSPGDSWLK WGSANGKADW TVNADEFGRL RRSSSFELGS  660
NGEEEPDLSW VQSLVKESPQ EMKERPAAPV LGGVDGSGSS GEGSNSNSQI EPTDQSVLGA  720
WLEQMQIDQL MAQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	88	GRRKGSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein