PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028092716.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LBD

Protein Properties

Length: 426aa MW: 47279.2 Da PI: 5.0875

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028092716.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.3	1.6e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++p+++r+ +++sl++eA+ r+ Pv+Gavg++++++++l+q+ XP_028092716.1 2 SCNGCRVLRKGCSENCILRPCLqwidsPESQGHATVFVAKFFGRAGLMSFISSVPPNQRPSLFQSLLFEACGRTVKPVNGAVGLLWTGNWHLCQA 96 6********************************************************************************************** PP DUF260 91 kaelall 97 +++++l+ XP_028092716.1 97 AVQTVLR 103 *998776 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MSCNGCRVLR KGCSENCILR PCLQWIDSPE SQGHATVFVA KFFGRAGLMS FISSVPPNQR 60 PSLFQSLLFE ACGRTVKPVN GAVGLLWTGN WHLCQAAVQT VLRGGALRSI PEFLGGAVLT 120 PPDLDEASEA EATCSDMFKL SHHQDPNPKY DCLLFDVDDT LYPLKSGLSA ECTKNIIEYM 180 INKLGMEEDK APEMCVQLYK DYGTTMAGLK AIGYDFDYDD YHSFVHGQLP YEILKPDPIF 240 KKILQSLPIR KVIFSNANKE HIANVLGRLG LEDCFEGVVC FETLNPLNKT DIPDAKAALE 300 LNGSKSSTIR STVTDFINDS CETNAEFPKT PIVCKPFEDA FELALKIAKI NPQRTLFFDD 360 SIRNLQTAKL MGLHTVWVGH SNLTKGVDYA LESIHNIKEA LPELCEAIEK IEDIHFLEKV 420 AIETSA

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MSCNGCRVLR KGCSENCILR PCLQWIDSPE SQGHATVFVA KFFGRAGLMS FISSVPPNQR  60
PSLFQSLLFE ACGRTVKPVN GAVGLLWTGN WHLCQAAVQT VLRGGALRSI PEFLGGAVLT  120
PPDLDEASEA EATCSDMFKL SHHQDPNPKY DCLLFDVDDT LYPLKSGLSA ECTKNIIEYM  180
INKLGMEEDK APEMCVQLYK DYGTTMAGLK AIGYDFDYDD YHSFVHGQLP YEILKPDPIF  240
KKILQSLPIR KVIFSNANKE HIANVLGRLG LEDCFEGVVC FETLNPLNKT DIPDAKAALE  300
LNGSKSSTIR STVTDFINDS CETNAEFPKT PIVCKPFEDA FELALKIAKI NPQRTLFFDD  360
SIRNLQTAKL MGLHTVWVGH SNLTKGVDYA LESIHNIKEA LPELCEAIEK IEDIHFLEKV  420
AIETSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-73	LBD family protein