PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028092352.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 253aa MW: 29114 Da PI: 4.7832 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.7 | 1.1e-16 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+s r+ t+ +Rr+gi+KKA LS+LCd+e+ v+++s++ XP_028092352.1 11 IVNDSSRKSTLKRRRAGIFKKAGDLSTLCDVEIGVLVYSQDE 52 789************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence |
MTGNKIKLEW IVNDSSRKST LKRRRAGIFK KAGDLSTLCD VEIGVLVYSQ DEDDLAVWPS 60 YGHMKQMFER FLSIPIVERS EKMTTYEGLL TQRVTQETHK NNMEKKNNDK KEIQEIMNQI 120 FEGSNLYQLD IMRLNYLSLL TGDKLMQLEE RERARRQHAL RSTDTLAPAP RPRMIEVDEA 180 FQAHTSTEAT CIEQLMNDNW FIETMALNQD MPGPSGVSDM GMPSGSVVDR MNGDNEEDLP 240 EDLNAFFPHI YSP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 2e-19 | M-type_MADS family protein |