PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028091774.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 147aa MW: 16327.3 Da PI: 8.4667 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.2 | 4.2e-11 | 60 | 85 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ lC++f+rtG C+yGd+Ck+ H++ XP_028091774.1 60 GRGLCNRFLRTGSCPYGDSCKYFHPK 85 6789********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence |
MPLGKYYCDY CEKQFQDTPS ARKRHLQGVQ HQRSKALWYN NINNNSLRDA NQQFHPDSFG 60 RGLCNRFLRT GSCPYGDSCK YFHPKQNLGV PDNIQSPLIP ESQLAGGPPF PGGVVGDGMG 120 ISLGNLPPSL KPPPEGGYPT FPYIDWG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 7e-41 | C3H family protein |