PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028091610.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family Trihelix
Protein Properties Length: 547aa    MW: 63009.2 Da    PI: 7.1012
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028091610.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.91.8e-1599162270
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                     W+++evlaL+++r++me+++ +       We+vs+k++e gf+rs+++Ck+k+e+ ++ + ++ +  k+
  XP_028091610.1  99 WSNDEVLALLRIRSSMENWFPDF-----TWEHVSRKLSELGFKRSAEKCKDKFEEESRHFDNMSTYTKN 162
                     ********************998.....9*****************************99887766554 PP
2trihelix94.11.4e-29393483185
        trihelix   1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                     rW+++evlaLi++r ++++  + g         k+plWe++s+ m e g++r++k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql
  XP_028091610.1 393 RWPRDEVLALINLRCSLNSGGKGGGggedkegTKGPLWERISQGMLELGYKRNAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQL 483
                     8**************999988864333444559********************************************8.9999********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    
MFDGVPDQFH QFIASRTSVP LPLSFFPLHG STQTTFPTFD PFPSHQTLQL QSQLLPQLHH  60
PPPPPTTHKA EEKEQQNSFI STSLELERER SVSEAIDPWS NDEVLALLRI RSSMENWFPD  120
FTWEHVSRKL SELGFKRSAE KCKDKFEEES RHFDNMSTYT KNYRFFSELE ELCHGDNNQN  180
PNKVLSERNQ NVENLFPNKE DSRNETTNSS QENEKKPRDK KRKRHKRFQM LKGFCEEVVK  240
KMMAQQEELH NKLIEDMVKK DEEKIAREEA WKRVEMERIN KEIDIMAQEQ AIASDRQSKL  300
IEFLKKFTPN SSQNSSSFIH LQNPNPPSQP SSQQNPSSET LALPENPSSK LLNSFQTPRN  360
TQKNPLSPTS SSTQKTPQNP NSAPNEKEDI GKRWPRDEVL ALINLRCSLN SGGKGGGGGE  420
DKEGTKGPLW ERISQGMLEL GYKRNAKRCK EKWENINKYF RKTKDVNKKR SLDSRTCPYF  480
HQLSGLYSQG TLRLENHSSV PENHSDVPEN RLDRPPPDGS SGGDANMHVD GEGEKNLIQV  540
PAFEFEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220227KKRKRHKR
2412419GGKGGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-104Trihelix family protein