PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028090699.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 363aa    MW: 42049.8 Da    PI: 6.2412
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028090699.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF511.8e-161151343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i n+  r+vt+ kR++g+ KK  EL +LCd++v++ii++++
  XP_028090699.1 11 IRNEKARYVTYQKRKKGLKKKTCELETLCDVQVCLIIYGPK 51
                    89*************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MGRAKQRMEL IRNEKARYVT YQKRKKGLKK KTCELETLCD VQVCLIIYGP KLDDNSTEVE  60
IWPQNPNDIQ RLIHTYRNQS IEDRHRRTLD LSNFFENRNQ EIEDALVKLR KKNDKVVYPT  120
WDDRYNDLSE GQLRAFEGML EGKLADVKAR VEFMKGTQAL ASLNDMEQTT QQNHSNYVMQ  180
GLFGTTSLQM GIIHEEMPIS SLNLLHEIDD ISRHYPFDQT DHQGIVELDA KSMAISPMMM  240
PMNNINDTHY TQLGGMSSSN LQCIDPLEKS IYYDPIMLLP SPESVLTGVS CIESSFSMSR  300
MMENEVRKNH HPSPSMAHYG GSSMQTMSPY MQYLKMASGP SEVHAWQMEE YYKANEFQMK  360
NQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.16e-21M-type_MADS family protein