PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028090338.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARF

Protein Properties

Length: 675aa MW: 75559.1 Da PI: 6.2137

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028090338.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.2	1.3e-22	127	227	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+e+ +++ ++l+ d++g +W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F + + XP_028090338.1 127 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQQP--PWQELVASDLHGSEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFL--RGE 217 99**************************964333..4459********************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_028090338.1 218 NGELRVGVRR 227 999***97 PP
2	Auxin_resp	115.3	5.3e-38	253	335	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv+++ ++rWp+S+WrsLk XP_028090338.1 253 ASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEARSQKLSVGMRFKMRFEGEEVPERRFSGTIVGVTESTSSRWPDSEWRSLK 335 789******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence
MAHIGGHHFS GGSLSGPAND ALYKELWHAC AGPLVTVPRE GERVYYFPQG HMEQLEASTH 60 QGLDQQLPSF NLPAKILCKV MNVQLRAEQE TDEVYAQITL LPEADQSEVT SSDPPLPEPQ 120 KCNVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSQ QPPWQELVAS DLHGSEWHFR 180 HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGENGE LRVGVRRLMR QQNNMPSSVI 240 SSHSMHLGVL ATASHAISTG TLFSVFYKPR TSRSEFVVSV NKYLEARSQK LSVGMRFKMR 300 FEGEEVPERR FSGTIVGVTE STSSRWPDSE WRSLKVQWDE PSSISRPERV SPWELEPLVA 360 ATSPSSQPLQ RNKRARPAVL PSPTPDLSAF GMWKTPAESP SAFSYCESQR GRDHYPSPKF 420 SSANPHGFSE NSSLTPVSSK PMYWSNQAET MTESFVPVVN KESSEKRQGT SNGYRLFGIE 480 LLDNCTMEET LPVITVPGAL AENQPVPSLD VESDRHSEPS NIYRSDIPSI SCEPEKSCLI 540 SPQESQSRQV RSCTKVHMQG IAVGRAVDLT RLYRYEDLLR KLEEMFEIEG ELCGSLKKWQ 600 VVYTDDEDDM MMVGDDPWHE FCNMVRKIFI YTNEEVKKLS PKVKLPASDE VKPCKSASDN 660 AVGTEDQLSD VGPAH

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence

MAHIGGHHFS GGSLSGPAND ALYKELWHAC AGPLVTVPRE GERVYYFPQG HMEQLEASTH  60
QGLDQQLPSF NLPAKILCKV MNVQLRAEQE TDEVYAQITL LPEADQSEVT SSDPPLPEPQ  120
KCNVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSQ QPPWQELVAS DLHGSEWHFR  180
HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGENGE LRVGVRRLMR QQNNMPSSVI  240
SSHSMHLGVL ATASHAISTG TLFSVFYKPR TSRSEFVVSV NKYLEARSQK LSVGMRFKMR  300
FEGEEVPERR FSGTIVGVTE STSSRWPDSE WRSLKVQWDE PSSISRPERV SPWELEPLVA  360
ATSPSSQPLQ RNKRARPAVL PSPTPDLSAF GMWKTPAESP SAFSYCESQR GRDHYPSPKF  420
SSANPHGFSE NSSLTPVSSK PMYWSNQAET MTESFVPVVN KESSEKRQGT SNGYRLFGIE  480
LLDNCTMEET LPVITVPGAL AENQPVPSLD VESDRHSEPS NIYRSDIPSI SCEPEKSCLI  540
SPQESQSRQV RSCTKVHMQG IAVGRAVDLT RLYRYEDLLR KLEEMFEIEG ELCGSLKKWQ  600
VVYTDDEDDM MMVGDDPWHE FCNMVRKIFI YTNEEVKKLS PKVKLPASDE VKPCKSASDN  660
AVGTEDQLSD VGPAH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.1	0.0	ARF family protein