PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028089505.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 334aa MW: 35804.7 Da PI: 8.2108

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028089505.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.9	5.4e-11	172	198	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kte+Cr + + +C+yG++C+FaHg+ XP_028089505.1 172 FKTEICRSWEDFSHCRYGSKCQFAHGK 198 79***********************96 PP
2	zf-CCCH	26.4	1.2e-08	217	238	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+ ++ +G C+yG++C+F H + XP_028089505.1 217 CKSYSSSGSCSYGAKCRFVHHQ 238 ********************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MEAPHGNNTS SRLSQLKVLD GNVSPINAQR DNNHQFLIGG GRFHHPSKSP SSAIDKNNLE 60 NLDSTLIRYL RSRSPASATT GDAFKTPAID SPKYYNSGGS SGFGSRGSSS VSPLSALENL 120 EPSVFKTPVK VEEDVLVMDG ILVRSGAGGR LRSLTSSDSG GSSSSSGSNS FFKTEICRSW 180 EDFSHCRYGS KCQFAHGKEE VRPSRFPIKN KSEAQMCKSY SSSGSCSYGA KCRFVHHQVV 240 AAASPTEPAV TDVALAKTQT ISPVKPENSS GSLSVTVTNT DWSPEDDGIE VTLPCSSSPE 300 KIPSREAVDA YINNVLYGPS RRKRLPVFAE ICPE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	5e-08	C3H family protein