PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028089503.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 353aa    MW: 38130.5 Da    PI: 8.2076
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028089503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.1e-07172194123
                     --S---SGGGGTS--TTTTT-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkF 23 
                     +kte+Cr +  + +C+yG++C++
  XP_028089503.1 172 FKTEICRSWEDFSHCRYGSKCQY 194
                     79*******************97 PP
2zf-CCCH26.31.3e-08236257627
                     -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                     C+ ++ +G C+yG++C+F H +
  XP_028089503.1 236 CKSYSSSGSCSYGAKCRFVHHQ 257
                     ********************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MEAPHGNNTS SRLSQLKVLD GNVSPINAQR DNNHQFLIGG GRFHHPSKSP SSAIDKNNLE  60
NLDSTLIRYL RSRSPASATT GDAFKTPAID SPKYYNSGGS SGFGSRGSSS VSPLSALENL  120
EPSVFKTPVK VEEDVLVMDG ILVRSGAGGR LRSLTSSDSG GSSSSSGSNS FFKTEICRSW  180
EDFSHCRYGS KCQYWLFLSV DDTTKLKFLL LQFAHGKEEV RPSRFPIKNK SEAQMCKSYS  240
SSGSCSYGAK CRFVHHQVVA AASPTEPAVT DVALAKTQTI SPVKPENSSG SLSVTVTNTD  300
WSPEDDGIEV TLPCSSSPEK IPSREAVDAY INNVLYGPSR RKRLPVFAEI CPE