PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028089285.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 201aa MW: 22608.6 Da PI: 8.875 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.9 | 1.1e-17 | 21 | 66 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 e++ r +tfskRr g+ KKA+EL+ LC++e v++fs++gk + + XP_028089285.1 21 ESEEDRLITFSKRRSGLYKKASELCALCNTELVVLMFSPSGKPFSF 66 78899************************************97776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence |
MESSKKQTKG RQRIDTSRRR ESEEDRLITF SKRRSGLYKK ASELCALCNT ELVVLMFSPS 60 GKPFSFAHPN IDVIARRFLK LPQEDVTGGI INARLRNRIN ELNERLTQLG DEAQAEKERG 120 QMLSHMAKVR PNKPLCDANI DELSDNDAGM LKAWLLELQD RIHNRFEELA ANATAYAGAP 180 ASLVDDTNVA SSRQGHGGMH F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 6e-23 | M-type_MADS family protein |