PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028088472.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 804aa    MW: 88196.7 Da    PI: 6.3323
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028088472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.52e-17108162256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +k +++t+ q++eLe++F+ n++p+++er eL k+l+L+ +q+k+WFqNrR++ k
  XP_028088472.1 108 KKFHRHTPFQIQELESHFKINNHPDEKERLELGKRLSLESKQIKFWFQNRRTQLK 162
                     566789*********************************************9987 PP
2START185.82.3e-583185411205
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++elvk+a  ++p+Wv+s     e +n +e++++ ++  +     + +ea ra+g+v+ ++  l+e+l+d + qW+e+++    + +t+
  XP_028088472.1 318 ELAVRAMDELVKLARIDDPLWVQSLvggwEVLNHEEYMRICPPCIGmkpsgFVTEATRATGMVITNSLALLETLMDAN-QWSEMFPcmigRTSTI 411
                     57899**************************************999999999**************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +vi sg        lqlm ae+qalsplvp R   f+R+++q+ +++w++vdvSvd  ++++  + +v +++lpSg+++++++ng+skvtwveh+
  XP_028088472.1 412 DVIFSGmagsrnCSLQLMHAEFQALSPLVPvRHMKFLRFCKQHAEKVWAVVDVSVDGIREVSDVATFVNCRRLPSGCIVQDMPNGYSKVTWVEHT 506
                     ***********99************************************************99******************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqce 205
                     +++++++h l+r l++sg+ +ga++w+atlqrq e
  XP_028088472.1 507 EYDESVVHHLYRALLSSGMGFGAQRWLATLQRQYE 541
                     ********************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    
MSLGGFNGGS GGVCGGDGSG KARLVIDSPY NAMSTAAMGQ PPPPLFTRPV FNSPALSLAL  60
KPKMEGHGEM GLMGRNKEDG HESRAESDNL EGASGDDQDA SGDKRLRKKF HRHTPFQIQE  120
LESHFKINNH PDEKERLELG KRLSLESKQI KFWFQNRRTQ LKTQAERHEN SYLKQQNEDL  180
LIANVRMKEA MRSPICNNCG GPAILGDVSI EEHHLRVENA RLKDELHRIS ALSNKFLGRP  240
ISALGDSIPP PMSISSLELA VGRNDFGGLS SVDTTFTMGL DSKDGVLNAL PMMPMVTTTL  300
TVGTAHDDMP FEKSIFLELA VRAMDELVKL ARIDDPLWVQ SLVGGWEVLN HEEYMRICPP  360
CIGMKPSGFV TEATRATGMV ITNSLALLET LMDANQWSEM FPCMIGRTST IDVIFSGMAG  420
SRNCSLQLMH AEFQALSPLV PVRHMKFLRF CKQHAEKVWA VVDVSVDGIR EVSDVATFVN  480
CRRLPSGCIV QDMPNGYSKV TWVEHTEYDE SVVHHLYRAL LSSGMGFGAQ RWLATLQRQY  540
ECLAVLMSST ISTEDHSGVT ATGRRSMVQL AQRMTSNFCA GVCGSMHMWQ LVQVGNVGED  600
LRLLIRNSMD NTGEPPGLVL SATTSVWMPV SQQRLFDFLQ DEQLRSEWDE LSHGGPMQEM  660
VHISKGQDRR NCVSLLRATQ AGNTNRNITL ILQETQTDAL GSLIVYAAVD IQAMQVVMSG  720
GDSTSVALLP SGFAIVPDGF CDSAGPENCN GTLVKGGGGS LLTVGFQLWV NSPPTAKLTM  780
ESVDTVNSLI SRTIQRIKAA LHCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein