PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028088461.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 172aa    MW: 18887.6 Da    PI: 7.3023
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028088461.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.81.2e-40301291100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +C aCk+lrr+C ++C lapyfp ++  +f ++h++FGasn++kll++lpe++r da+ss+vye++ar++dPvyG++g+i +l++++ +l+aela
  XP_028088461.1  30 PCGACKILRRRCISNCLLAPYFPPTDLFRFSVAHRVFGASNIIKLLQELPESQRADAVSSIVYESNARIKDPVYGCAGIIYQLHKKVTELQAELA 124
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_028088461.1 125 KTQAE 129
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MELTPLASSS SKTQSPPLPP PPSSGVIMSP CGACKILRRR CISNCLLAPY FPPTDLFRFS  60
VAHRVFGASN IIKLLQELPE SQRADAVSSI VYESNARIKD PVYGCAGIIY QLHKKVTELQ  120
AELAKTQAEL VSMQCMQAMD TSQSQQQNPP YDNSGFSFDG SNVGLPWEHP WT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-62LBD family protein