PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028088331.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | LBD | ||||||||
Protein Properties | Length: 256aa MW: 28286 Da PI: 7.093 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89.7 | 3.6e-28 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++dC l+p++ p++q++++ +++k++G++ +l+ll+a p++ r+ +++sl+yeA+ r+ +P++G+vg++ + +++ +q+ XP_028088331.1 4 SCNGCRVLRKGCTDDCSLRPCLqwinsPDSQSNATLFLAKFYGRAGLLNLLNAGPNHLRPSIFRSLLYEACGRIINPISGSVGLLCSNNWDRCQE 98 6********************************************************************************************** PP DUF260 91 kaelallke 99 +++++l ++ XP_028088331.1 99 AVDAVLNGS 107 999988765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence |
MRTSCNGCRV LRKGCTDDCS LRPCLQWINS PDSQSNATLF LAKFYGRAGL LNLLNAGPNH 60 LRPSIFRSLL YEACGRIINP ISGSVGLLCS NNWDRCQEAV DAVLNGSPIM KLNFDDADAA 120 AAQPIMPLKG CDIRHLTKDS DDNIRHRKTP FKRSGGRGKS RFDESTTEPA RFCVAKWGGN 180 HPEEEVNRHP SHDSSMFSVE TLEASLLVNR AVKCEPQEIE VGLDLSLGFN PVFHPQVPTT 240 VEERKLIQFF DGGGDV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-62 | LBD family protein |