PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028087535.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 444aa MW: 47762.1 Da PI: 9.5886

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028087535.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	208	230	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H XP_028087535.1 208 ACSECGEVFPKIESLELHQAVrH 230 6******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MNVRRAYFVP VLFYFLSLLF MALLTFAPDS SQSKKQQQPA SKRKRKHQIH SQQSSPSSSW 60 DQIKNLLTCK QIEGSTVHDP SSSSSKGSGG SAKLSSSCSS ICSFRDVVHG NTSRVVHRAD 120 NSPEGSTVGK DNNRLLTRKA TAAAGVTGSA SSRSLSSSTR SNGGSGGGGA TFTCSSRGMQ 180 LRKLSGCYEC RMIVDPSRYP SPRSTICACS ECGEVFPKIE SLELHQAVRH AVSELGPEDS 240 GRNIVEIIFK SSWLKKDIPI CKIERILKVH NTQRTIQRFE DCRDTVKIRA NANTKKNPRC 300 AADGNELLRF HSTTLSCTLG ARGSSSLCGL TPGCGVCTVI KHGFSGKASD GKGVRTTASS 360 GRAHDCINGG DGRRAMLVCR VIAGRVRRMA DDGAEEEESV SAGSYDSVAG YAGIYSNLEE 420 LYVFNPRAIL PCFVVIYKAL QCSG

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MNVRRAYFVP VLFYFLSLLF MALLTFAPDS SQSKKQQQPA SKRKRKHQIH SQQSSPSSSW  60
DQIKNLLTCK QIEGSTVHDP SSSSSKGSGG SAKLSSSCSS ICSFRDVVHG NTSRVVHRAD  120
NSPEGSTVGK DNNRLLTRKA TAAAGVTGSA SSRSLSSSTR SNGGSGGGGA TFTCSSRGMQ  180
LRKLSGCYEC RMIVDPSRYP SPRSTICACS ECGEVFPKIE SLELHQAVRH AVSELGPEDS  240
GRNIVEIIFK SSWLKKDIPI CKIERILKVH NTQRTIQRFE DCRDTVKIRA NANTKKNPRC  300
AADGNELLRF HSTTLSCTLG ARGSSSLCGL TPGCGVCTVI KHGFSGKASD GKGVRTTASS  360
GRAHDCINGG DGRRAMLVCR VIAGRVRRMA DDGAEEEESV SAGSYDSVAG YAGIYSNLEE  420
LYVFNPRAIL PCFVVIYKAL QCSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-149	C2H2 family protein