PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028087327.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 23309.8 Da    PI: 8.3759
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028087327.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.87.9e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++g+lye+s+
  XP_028087327.1  9 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPKGRLYEFSN 59
                    79***********************************************95 PP
2K-box62.71.4e-2181161484
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                      sg++ +e++ ++l++e+  + ++ie ++ ++R+llG++Les+ ++eLq +e+qLeksl +iR++K+++l+e+ ++l++k 
  XP_028087327.1  81 GSGRKEAEENLQHLKEEAVSMSQKIELIEASKRKLLGDCLESCCINELQLIEEQLEKSLHNIRARKEKILTEENQKLREKC 161
                     456668999*********************************************************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MVRGKTQMKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSP KGRLYEFSNS  60
RCLSISKTIE RYQRNTKEQD GSGRKEAEEN LQHLKEEAVS MSQKIELIEA SKRKLLGDCL  120
ESCCINELQL IEEQLEKSLH NIRARKEKIL TEENQKLREK CEVRSPHLPI PLLVAPEPNR  180
EFSDVETELF IGLPEQRTTH SL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.14e-60MIKC_MADS family protein