PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028086747.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 549aa    MW: 61244.5 Da    PI: 6.2814
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028086747.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS256.68.8e-791655412374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL  cA a+++++++++q+lL  l+elas +gd+++Rla + ++AL ++l++ +s+++  + + + ++++ +   ++l  f evsP++ f + 
  XP_028086747.1 165 EQLLNPCAAAITTSNMTRVQHLLYVLHELASASGDANHRLADHGLRALTHHLSSPGSSVS--VGTINFASTKPQFFQKSLMRFDEVSPWFMFPNK 257
                     689***************************************************777766..44444444456677777777************* PP

            GRAS  97 taNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfef 178
                     +aN  Il+ + +e   + +Hi+D+++s+G+QWp+Ll+aL+ Rp ++pp +R+T++g+ + +         +    ++   +L  fA+++++++++
  XP_028086747.1 258 IANTSILQILGEEdrsRNLHILDIGVSHGFQWPTLLEALTRRPgGPPPLVRLTVIGATTDDdrnpdipfaNGPPGHSSSTQLLCFAKSMNINLQI 352
                     **********999666778************************55566*********88879999999999999999****************** PP

            GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..ns.esFlerflealeyysalfds 270
                     n l  + l++l+++ ++ +p+E+l+V+++++lh+l    ++ +++r+e+L++++sl+Pk v+++e+++d+  n+ ++F+++f++ +ey ++++ds
  XP_028086747.1 353 NRLDNHPLQNLNTQIINSSPDETLIVCSQFRLHHLN---HNCPDNRTEFLRALRSLEPKGVILSENNMDCscNTcGDFATGFSRRVEYLWKFLDS 444
                     **9999*****************************8...77777789********************8874443259****************** PP

            GRAS 271 leakl.preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                     ++a + +res+er+++     + e+ +++++++++    +e  ++W er++++GF    ++e++ ++a++llrk++ ++++rveee+g++ l Wk
  XP_028086747.1 445 TSAAFkGRESDERRMM-----EGEAAKALTNSEEM----NEWRQRWCERMRRVGFVGKVFGEDTIDEARALLRKYDsNWEMRVEEEDGCVGLWWK 530
                     *666514555555555.....55578888887777....788889*******************************9999*************** PP

            GRAS 364 drpLvsvSaWr 374
                     ++p+ + S W+
  XP_028086747.1 531 GQPVSFSSLWK 541
                     **********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    
MVLDESDPIS SSDHILDWLE GSISFLPSFL EDPYNSGDLN GDQWWVQGCQ DLGQEFLNTS  60
STSFNSASTI TTATSTTLTG PIVTNDVPPS DSCKKRKVSD DPVPKAPQNQ RKSQNRRVNK  120
ATDDGDAVVE QGVTVKKSVG TKKASAKSVG NNCNNGNNRE GRWAEQLLNP CAAAITTSNM  180
TRVQHLLYVL HELASASGDA NHRLADHGLR ALTHHLSSPG SSVSVGTINF ASTKPQFFQK  240
SLMRFDEVSP WFMFPNKIAN TSILQILGEE DRSRNLHILD IGVSHGFQWP TLLEALTRRP  300
GGPPPLVRLT VIGATTDDDR NPDIPFANGP PGHSSSTQLL CFAKSMNINL QINRLDNHPL  360
QNLNTQIINS SPDETLIVCS QFRLHHLNHN CPDNRTEFLR ALRSLEPKGV ILSENNMDCS  420
CNTCGDFATG FSRRVEYLWK FLDSTSAAFK GRESDERRMM EGEAAKALTN SEEMNEWRQR  480
WCERMRRVGF VGKVFGEDTI DEARALLRKY DSNWEMRVEE EDGCVGLWWK GQPVSFSSLW  540
KLDLKQSNM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1478487RQRWCERMRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-148GRAS family protein