PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028086555.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 497aa MW: 53782.6 Da PI: 9.4765

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028086555.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_028086555.1 63 FVCEICNKGFQRDQNLQLHRRGH 85 89*******************88 PP
2	zf-C2H2	12.8	0.00037	140	162	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_028086555.1 140 WKCEKCSKKYAVQSDWKAHSKTC 162 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MMPGDVFSIP TSIKGFSQDS DPNPNPKSNT IAAKKKRNLP GTPDPDAEVI ALSPKTLMAT 60 NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRSNKEVV KKKVYICPET TCVHHHASRA 120 LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA VQSDWKAHSK TCGTREYKCD CGTLFSRKDS 180 FITHRAFCDA LAIESARLTP VPATHMNFTT EPLDENANNN LTHQPNLQSG IDAGISQFGA 240 GFRPNYGSEA AGKPGLSLWL DQENPQLNTI DMSTNSNLFV SSGSANMFGS SSTMSNFGNC 300 NNWIDKNATT SKSADLSLSG GVNSHTHQSN SPGVVPMSAT ALLQKAAQMG STRSNPNHNP 360 SFLGNNFGVM NMNMNMNSPS SSDTSPFNHR VVPKPAEILV SAANLATVCG GGVMGSSSLS 420 SLVSTSSNFE QIMMQSGVNS MLPLKLNPGS NVFENSLTRD FLGVGGEGGR PFLPQELAKF 480 ASMSSAMGLS HFMTSNH

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MMPGDVFSIP TSIKGFSQDS DPNPNPKSNT IAAKKKRNLP GTPDPDAEVI ALSPKTLMAT  60
NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRSNKEVV KKKVYICPET TCVHHHASRA  120
LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA VQSDWKAHSK TCGTREYKCD CGTLFSRKDS  180
FITHRAFCDA LAIESARLTP VPATHMNFTT EPLDENANNN LTHQPNLQSG IDAGISQFGA  240
GFRPNYGSEA AGKPGLSLWL DQENPQLNTI DMSTNSNLFV SSGSANMFGS SSTMSNFGNC  300
NNWIDKNATT SKSADLSLSG GVNSHTHQSN SPGVVPMSAT ALLQKAAQMG STRSNPNHNP  360
SFLGNNFGVM NMNMNMNSPS SSDTSPFNHR VVPKPAEILV SAANLATVCG GGVMGSSSLS  420
SLVSTSSNFE QIMMQSGVNS MLPLKLNPGS NVFENSLTRD FLGVGGEGGR PFLPQELAKF  480
ASMSSAMGLS HFMTSNH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-107	C2H2 family protein