PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028086531.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARF

Protein Properties

Length: 683aa MW: 75449.5 Da PI: 7.162

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028086531.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.9	8.1e-23	121	222	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g+ W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + + XP_028086531.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNHKKLIAGDSIVFLR--AD 211 89**************************996555555..89*******************************************3..47 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_028086531.1 212 NGDLCVGIRRA 222 7888**996 PP
2	Auxin_resp	112.8	3.3e-37	284	367	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a ++++FevvY+Prast+eF+vk+ v++al+v+++ GmRfkmafetedss++++ +Gt+++v+ +dp++Wp+S+Wr+L+ XP_028086531.1 284 AATLAGNGQPFEVVYYPRASTPEFCVKAVLVKAALQVRWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPIHWPDSPWRLLQ 367 6788999***************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence
MITFIDSKDK MNETEKCLDS QLWHACAGSM VQMPLVNSKV FYFPQGHAEH SCGNVNFRNC 60 PRIPSYVTCR VSAIKFMADP ETDEVYAKIR LVPFNRNEID YEDDGVGGIN APDTQEKPSS 120 FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGEI WKFRHIYRGT 180 PRRHLLTTGW STFVNHKKLI AGDSIVFLRA DNGDLCVGIR RAKRGIGGGP ESSSGWNPAG 240 GNCVMPYGGL SAFFREDENK LMRNGNGGNS TGKGKVRPES VVEAATLAGN GQPFEVVYYP 300 RASTPEFCVK AVLVKAALQV RWCSGMRFKM AFETEDSSRI SWFMGTISSV QVADPIHWPD 360 SPWRLLQVTW DEPDLLQNVK HVSPWLVELV SNMPAIHLSP FSPPHKKLKL PQHPDFPFDN 420 NQPPIMPTFS SNLLRPTSFP LNCLPPDNTP AGMQGARHAQ YGISLSDFHL NKLHSSLFSP 480 PFLRFDHSAR PIRPSNPHIA HNPSSIENVS CLLTMGDCNP TSKKPGNAKG TQFVLFGQPI 540 FTEQQISQSC SGDTISPVHT GNSSSEGNAD KMANVSNGSG SALPERSSCE GLQYLETGHC 600 KVFMESENVG RTLDLSVLGS YEELYRKLAN MFGIESSEML NHVLCRDVTG SVKQIGEEPF 660 REFMKTAKRL TILMDSSSDN VGM

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence

MITFIDSKDK MNETEKCLDS QLWHACAGSM VQMPLVNSKV FYFPQGHAEH SCGNVNFRNC  60
PRIPSYVTCR VSAIKFMADP ETDEVYAKIR LVPFNRNEID YEDDGVGGIN APDTQEKPSS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGEI WKFRHIYRGT  180
PRRHLLTTGW STFVNHKKLI AGDSIVFLRA DNGDLCVGIR RAKRGIGGGP ESSSGWNPAG  240
GNCVMPYGGL SAFFREDENK LMRNGNGGNS TGKGKVRPES VVEAATLAGN GQPFEVVYYP  300
RASTPEFCVK AVLVKAALQV RWCSGMRFKM AFETEDSSRI SWFMGTISSV QVADPIHWPD  360
SPWRLLQVTW DEPDLLQNVK HVSPWLVELV SNMPAIHLSP FSPPHKKLKL PQHPDFPFDN  420
NQPPIMPTFS SNLLRPTSFP LNCLPPDNTP AGMQGARHAQ YGISLSDFHL NKLHSSLFSP  480
PFLRFDHSAR PIRPSNPHIA HNPSSIENVS CLLTMGDCNP TSKKPGNAKG TQFVLFGQPI  540
FTEQQISQSC SGDTISPVHT GNSSSEGNAD KMANVSNGSG SALPERSSCE GLQYLETGHC  600
KVFMESENVG RTLDLSVLGS YEELYRKLAN MFGIESSEML NHVLCRDVTG SVKQIGEEPF  660
REFMKTAKRL TILMDSSSDN VGM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein