PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028086426.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 545aa    MW: 61700.9 Da    PI: 8.3867
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028086426.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS342.57.1e-1051705131345
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL +cA+av++ d ++a++lL+r++++asp+gd ++Rla yf++AL+arla+++++ly+a+++++ s   +++ l+ +++f +++P+ k+s+
  XP_028086426.1 170 LRTLLSQCAQAVANADIRNANELLNRIRQHASPTGDGTERLAYYFANALEARLAGTGTSLYAAFKTKRIS---VADILKGYQVFMKACPFNKMSN 261
                     5789************************************************************999999...********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                     + aN+ I   v+ ++++HiiDf++ +G+QWp+L+q ++ R++gpp +lR Tg++ p++g   ke++eetg+rLa ++++++vpfe+++ +ak+++
  XP_028086426.1 262 MFANKSIAALVHAKQTLHIIDFGVLYGFQWPCLIQHFSVREGGPPkKLRFTGIDFPQPGfrPKERVEETGRRLAIYCKRFNVPFEYTA-IAKKWS 355
                     *****************************************888889***********9*****************************.7***** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     ++eleeL+++++E+l+Vn+ ++l +++de+v  +s+rd+vL+lvk+++P+++++   +  +n++ F++rf eal ++sa fd +e++lpre++ r
  XP_028086426.1 356 TIELEELNIDRDEVLVVNCLYRLRNVPDETVVESSPRDAVLNLVKRINPDMFIHGVINGTYNAPFFVTRFREALFHFSAGFDVFETTLPREDQGR 450
                     *********************************************************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                     + +E+e+lgr+++nv+aceg+er+er et+++W+ r ++aGF++++l+++ +++   ll+ + 
  XP_028086426.1 451 MLYEKEILGRDVMNVIACEGTERVERPETYKQWQVRNTRAGFRQLQLNKELVTSLCFLLQIHR 513
                     ****************************************************99999998776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    
MQSISSPNGS GDGSVDSLPF QISSEAKFGE LVPTTDYVNY RSESTWKVWE GAEQNQGDHP  60
PHGSREKKTH NREDADYTDG AGRSNKQLAS FAEEADDQLY DKVLLCPRLN PHLHQDEPLH  120
FLCTEHDDDD ASSIVAGRKS PQNGVAAKGA NGGGRGRGKK QGNKKEVIDL RTLLSQCAQA  180
VANADIRNAN ELLNRIRQHA SPTGDGTERL AYYFANALEA RLAGTGTSLY AAFKTKRISV  240
ADILKGYQVF MKACPFNKMS NMFANKSIAA LVHAKQTLHI IDFGVLYGFQ WPCLIQHFSV  300
REGGPPKKLR FTGIDFPQPG FRPKERVEET GRRLAIYCKR FNVPFEYTAI AKKWSTIELE  360
ELNIDRDEVL VVNCLYRLRN VPDETVVESS PRDAVLNLVK RINPDMFIHG VINGTYNAPF  420
FVTRFREALF HFSAGFDVFE TTLPREDQGR MLYEKEILGR DVMNVIACEG TERVERPETY  480
KQWQVRNTRA GFRQLQLNKE LVTSLCFLLQ IHRPNHTIRS DLYIYIYIKI LGKSIPNFCP  540
NRVLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-158GRAS family protein