PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028086238.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 328aa MW: 36882.1 Da PI: 9.087

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028086238.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	48.3	1.7e-15	247	272	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yGd+C+FaHg XP_028086238.1 247 FKTELCNKWQETGKCPYGDNCQFAHG 272 79***********************8 PP
2	zf-CCCH	17.7	6.5e-06	285	310	1	26
--S---SGGGGTS.--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHg 26 ykte Cr + G C+yG rC+F H+ XP_028086238.1 285 YKTEVCRMLLS-GdSCPYGHRCHFRHS 310 99***7777.66********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MDVCSSIKIR LLRLYFDVCL DEIVVFLLHL IDCFAKILKF LSKFLSLKSA FELIAKHFLC 60 LEISATSHVH STSNSTIATQ CASLTSKNRS KKSTLREEND NLRVANTDLV NRLSLLSQAT 120 IQNCLLSSSH PPLSFVNDFN CLSVGGGGTV RDNRVSEEIS NISPTSVIEH NRIERRSTER 180 VVLPKSISVR SRGYLKMTQR GGGSNGGPSR SNQVKSPILN GSQRVYVPGG KREEEALEFE 240 VYNQGMFKTE LCNKWQETGK CPYGDNCQFA HGITELRPVI RHPRYKTEVC RMLLSGDSCP 300 YGHRCHFRHS LTQQERLLGP HRINDHTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	2e-64	C3H family protein