PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028085939.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 467aa MW: 51683.1 Da PI: 8.5821

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028085939.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.2e-05	59	79	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H+r H XP_028085939.1 59 CEICGKGFQRDQNLQLHLRGH 79 *******************98 PP
2	zf-C2H2	13.5	0.00021	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_028085939.1 133 WKCEKCSKRYAVQSDWKAHSKTC 155 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MLEKMAEEAI PMGFVQNPTG ASNPPHLKKK RNLPGTPDPE AEVIALSPKT LMATNRFLCE 60 ICGKGFQRDQ NLQLHLRGHN LPWKLKQRTS KEPRKRVYVC PEKTCVHHHP SRALGDLTGI 120 KKHFCRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY KCDCGTVFLR RDSFITHRAF 180 CDALAEETAR VTATSNINNT MFSDINYHVT GAPSPIGPDL VHFSSIFKPT TLNNNDEITD 240 PPKWGFSLWM AQGTQGHEAM GNNLQQNHQI GSLSSSTLYG DPLVSCSNPP PTDYQLNWVL 300 GNKLSSKNGE EELTSTSLPL SNFKDQLVSV PSLYSTQHHS HQTLLPNISA TALLQKAAQI 360 GATSTDPSFL GSFGLKCSSN NQVQDGNKLC GLYGTTNPIK TSHGNRSDVE SSLNDLSTFN 420 QLQNYPSKWR NIQNEDSSNN SVGGETRDFL GVGAQSICHS SSVNGWI

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MLEKMAEEAI PMGFVQNPTG ASNPPHLKKK RNLPGTPDPE AEVIALSPKT LMATNRFLCE  60
ICGKGFQRDQ NLQLHLRGHN LPWKLKQRTS KEPRKRVYVC PEKTCVHHHP SRALGDLTGI  120
KKHFCRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY KCDCGTVFLR RDSFITHRAF  180
CDALAEETAR VTATSNINNT MFSDINYHVT GAPSPIGPDL VHFSSIFKPT TLNNNDEITD  240
PPKWGFSLWM AQGTQGHEAM GNNLQQNHQI GSLSSSTLYG DPLVSCSNPP PTDYQLNWVL  300
GNKLSSKNGE EELTSTSLPL SNFKDQLVSV PSLYSTQHHS HQTLLPNISA TALLQKAAQI  360
GATSTDPSFL GSFGLKCSSN NQVQDGNKLC GLYGTTNPIK TSHGNRSDVE SSLNDLSTFN  420
QLQNYPSKWR NIQNEDSSNN SVGGETRDFL GVGAQSICHS SSVNGWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-151	C2H2 family protein