PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028085682.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family Whirly
Protein Properties Length: 270aa    MW: 30030.9 Da    PI: 9.1639
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028085682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly2126.4e-66932311139
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     svyk+kaal+v+++ p+f+aldsg++kl+r+G +ll++a+a+++r+ydW++kq+f+ls+te+++l+ l++++sceffhdp++++s+eGkvrk+lk
  XP_028085682.1  93 SVYKGKAALTVEPRPPEFSALDSGAFKLTREGYVLLQFAPAAGVRQYDWGRKQVFSLSVTEIGTLIGLGARDSCEFFHDPFKGKSDEGKVRKVLK 187
                     79********************************************************************************************* PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                     vePlpdG+G+f+nl+v+n+l++ +es+++P++kae++vl s+++
  XP_028085682.1 188 VEPLPDGTGHFFNLNVQNKLINMDESIYIPITKAEYTVLVSAFN 231
                     ***************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MLNLFPSSSC SCLTIQNPNK LSSLESITPT CLNPNTSSLS SSTTTKPSSQ NLSFKCRHSN  60
NYFEQQQQQR FAPKPPPTND SKSGQPRVFV GHSVYKGKAA LTVEPRPPEF SALDSGAFKL  120
TREGYVLLQF APAAGVRQYD WGRKQVFSLS VTEIGTLIGL GARDSCEFFH DPFKGKSDEG  180
KVRKVLKVEP LPDGTGHFFN LNVQNKLINM DESIYIPITK AEYTVLVSAF NFIVPYLLGW  240
HTFANSIKPE DNIRVNNANP RSGADFEWSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-116Whirly family protein