PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028085605.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 266aa MW: 27768.5 Da PI: 8.4347

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028085605.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.5	1.1e-08	66	91	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ + Ck+Gd+C+FaHg+ XP_028085605.1 66 KTRMCNKYNTAEGCKFGDKCHFAHGE 91 89**********************96 PP
2	zf-CCCH	33.1	9.6e-11	234	258	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C++f + G C +G+rC+FaHg XP_028085605.1 234 FKTKICDNFIK-GSCTFGERCHFAHG 258 69*******.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MHLVLLGICS TSGCPFGEGC HFLHYVPGGI KTVTQMLGNN PADPTAARNP APPPSFPDGS 60 SPPAVKTRMC NKYNTAEGCK FGDKCHFAHG EWELGKPSSI PHHHEDPRGM GGGPMGGRFG 120 GGRMEPQAPP GLAASFGASA TAKISVDASL AGAIIGKSGV NSKQICRLTG AKLSIREHES 180 DPNLRNIELE GTFDQIKQAS AMVRELIVNI GSASGPPPMK NHGMPGSGPA GGNFKTKICD 240 NFIKGSCTFG ERCHFAHGAD ELRRSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	122	GGRFGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	2e-56	C3H family protein