PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028085463.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 517aa MW: 57536.1 Da PI: 7.0252

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028085463.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	391	414	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C +C+ sF k ++ +H+++ H XP_028085463.1 391 FECYKCNLSFDEKNTYLKHLMSvH 414 89******************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MVTVPTTITT ETPPPPPPCG PKLESLTHID ISKLSQSELH ALSLCSSAAF DLRRTDDIIS 60 PQIDRTVFNE SAGSRRQTYS RLRLDSSSSS SAAAVHRSRL PGLLPNPRPP PSLGPDDPEH 120 AENKSIVNFL KQLITTANKI ENSDRFLLAP PPQSVVSGDP ESVPPPPDMQ IVVYSGEMKR 180 KRGRKPKPKD MENGGEIELE IVNKNGVVVD FRALENGDEL YGAELRRRTV GLEKEEEVLG 240 FLRNFEGQWG SRRKKRKIVD ASEFGDSLPI GWKLLLGLKR REGQVSVYCR RYISPSGQQF 300 VSCKEAASYL QSYFGLNDAS QPSNQMGGNN QQVFGLASEN HAGFVRQNDD LKQDTIPNSM 360 LPSSSIPNVQ EMEISLMEID NLPDVEVRDL FECYKCNLSF DEKNTYLKHL MSVHQRTTRR 420 YRLGSSIGEG VIIKDGKYEC QICHKVFQER RSYNGHVGIH VRNCVRSSEE LPGQAALLKC 480 TESPSPSPSP DELPPRITKM DALIQIAQSS ILETPTA

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MVTVPTTITT ETPPPPPPCG PKLESLTHID ISKLSQSELH ALSLCSSAAF DLRRTDDIIS  60
PQIDRTVFNE SAGSRRQTYS RLRLDSSSSS SAAAVHRSRL PGLLPNPRPP PSLGPDDPEH  120
AENKSIVNFL KQLITTANKI ENSDRFLLAP PPQSVVSGDP ESVPPPPDMQ IVVYSGEMKR  180
KRGRKPKPKD MENGGEIELE IVNKNGVVVD FRALENGDEL YGAELRRRTV GLEKEEEVLG  240
FLRNFEGQWG SRRKKRKIVD ASEFGDSLPI GWKLLLGLKR REGQVSVYCR RYISPSGQQF  300
VSCKEAASYL QSYFGLNDAS QPSNQMGGNN QQVFGLASEN HAGFVRQNDD LKQDTIPNSM  360
LPSSSIPNVQ EMEISLMEID NLPDVEVRDL FECYKCNLSF DEKNTYLKHL MSVHQRTTRR  420
YRLGSSIGEG VIIKDGKYEC QICHKVFQER RSYNGHVGIH VRNCVRSSEE LPGQAALLKC  480
TESPSPSPSP DELPPRITKM DALIQIAQSS ILETPTA