PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028085361.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 751aa    MW: 81701 Da    PI: 6.8194
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028085361.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS409.62.9e-1253907452374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAeav+++++e+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y++lp+ + s    ++ +aa+++f+ +sP++kfsh+
  XP_028085361.1 390 LTLLLKCAEAVAADNFEEARKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVNSCLGIYATLPTIPHS----QKMVAAFQVFNGISPFVKFSHF 480
                     579************************************************************999996....899999**************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+g+p +R+Tg+g     + e+le+tg+rL++fAe+lg+ fef + va+++ +l++
  XP_028085361.1 481 TANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGSPFVRLTGLGT----NMEALEATGKRLSDFAERLGLAFEFVP-VAEKVGNLDP 570
                     *****************************************************....9**************************.7********* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     e+L+v+++Ea+a+++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a++++eseer++vE
  XP_028085361.1 571 ERLNVRKREAVAIHWLQ--HSLYDVTGSDAH----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVE 658
                     ****************9..999988888888....**********************.899********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ll+rei+nv+a  g +r+ + + +++Wre+l+++GFk ++l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L+++SaWr
  XP_028085361.1 659 QQLLSREIRNVLAVGGPSRTGEVK-FNNWREKLQQSGFKGISLAGNAAAQATLLLGMFPSDGYTLVEDNGALKLGWKDLCLLTASAWR 745
                     ******************988887.**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    
MATACSSVVD NRDDVESNST NGSPKLTRSN YRNQSIPLSD GKMVRKRAAS EIELHPGGYN  60
RFLRRNATTS TAVNPLIAAT EMGCSYLNGD NNNHSNHSHS TTHVLPNHST TLLSSTNPNV  120
TSSGSGSGFL DPLSSHSHPH LLLPQDHQSQ APSVCVFSGL PLFPPERNRT TNSTVAPPPS  180
TAAAVAPFSG GSSMDDAAAS TAWIDGIIKD LIHSSSHVSL PQLIQNVREI IHPCNPNLAA  240
LLEYRLRSLT EAPTIPSYPE RRKEAAPPIP PLLNSSCQLS NSSTPHPMNQ YSNWGQPLPS  300
PPIATTSAAV VSQGNAQLLR NNPASPNSIT PIISNQVEQP SQEKPHQDSP TAEHSTPPPP  360
PPASTAIVAR EKKEEMRRQQ KRDEEGLHLL TLLLKCAEAV AADNFEEARK MLLEISELST  420
PFGTSAQRVA AYFSEAMSAR LVNSCLGIYA TLPTIPHSQK MVAAFQVFNG ISPFVKFSHF  480
TANQAIQEAF EREERVHIID LDIMQGLQWP GLFHILASRP GGSPFVRLTG LGTNMEALEA  540
TGKRLSDFAE RLGLAFEFVP VAEKVGNLDP ERLNVRKREA VAIHWLQHSL YDVTGSDAHT  600
LWLLQRLAPK VVTVVEQDLS HAGSFLGRFV EAIHYYSALF DSLGASYGEE SEERHVVEQQ  660
LLSREIRNVL AVGGPSRTGE VKFNNWREKL QQSGFKGISL AGNAAAQATL LLGMFPSDGY  720
TLVEDNGALK LGWKDLCLLT ASAWRPLPFH T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein