PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028085273.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 563aa MW: 61587.7 Da PI: 8.1482

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028085273.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_028085273.1 84 FVCEICNKGFQRDQNLQLHRRGH 106 89*******************88 PP
2	zf-C2H2	15.4	5.2e-05	160	182	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ XP_028085273.1 160 WKCDKCSKKYAVQSDWKAHQKTC 182 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MSNITGDDGS FSSGEEEVHQ LQEKQLQSHF HGSGSGPSPT ATASNGSTSK PSLLKKKRNL 60 PGTPDPTAEV VALSPTTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRTSTEV 120 RKRVYICPET TCVHHNPARA LGDLTGIKKH FSRKHGEKKW KCDKCSKKYA VQSDWKAHQK 180 TCGTREYKCD CGTIFSRRDS FITHRAFCDA LAEENNKVNH QGLIPNMHGS NLQSQIPELM 240 SSSMPINTHT NSSMGLPEFN GYDHKNPLKS FPQELVPVPF KPMNMPTGGM FSTSSGTLFG 300 GPRSVSSSPS TLQLSSNSSS GFNYLQDNKN VNQLSGSAHM SATALLQKAA QMGATASNSI 360 NSPMMQKSFV SSMAGPDQHG MRPSSSYGAI QQHNNSYEHF QTQNEQSNLV GINDGGGGEG 420 GFNNPMLQKS PQEISQLFDS GTGGGGAMNE MGMFGGMFMN NTEHEEDSNS SSLMQGRAPA 480 GRNLTGLSRL GGNDSGTNDM MTVDFLGIGG SKPPNLHEHV QQQQQQQRLV LEAMSQQRMQ 540 VMNPFQEQLP QEEPSMEKPI WDV

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MSNITGDDGS FSSGEEEVHQ LQEKQLQSHF HGSGSGPSPT ATASNGSTSK PSLLKKKRNL  60
PGTPDPTAEV VALSPTTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRTSTEV  120
RKRVYICPET TCVHHNPARA LGDLTGIKKH FSRKHGEKKW KCDKCSKKYA VQSDWKAHQK  180
TCGTREYKCD CGTIFSRRDS FITHRAFCDA LAEENNKVNH QGLIPNMHGS NLQSQIPELM  240
SSSMPINTHT NSSMGLPEFN GYDHKNPLKS FPQELVPVPF KPMNMPTGGM FSTSSGTLFG  300
GPRSVSSSPS TLQLSSNSSS GFNYLQDNKN VNQLSGSAHM SATALLQKAA QMGATASNSI  360
NSPMMQKSFV SSMAGPDQHG MRPSSSYGAI QQHNNSYEHF QTQNEQSNLV GINDGGGGEG  420
GFNNPMLQKS PQEISQLFDS GTGGGGAMNE MGMFGGMFMN NTEHEEDSNS SSLMQGRAPA  480
GRNLTGLSRL GGNDSGTNDM MTVDFLGIGG SKPPNLHEHV QQQQQQQRLV LEAMSQQRMQ  540
VMNPFQEQLP QEEPSMEKPI WDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-101	C2H2 family protein