PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028084904.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family YABBY
Protein Properties Length: 187aa    MW: 20993.8 Da    PI: 8.6052
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028084904.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY203.67.5e-6361603170
           YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 
                     v+  +eq+Cy+ CnfCn +lavsvPs+ lf +vtvrCGhC++llsvn+a a q l+ ++    +  ++    +  ++ +l s   +++++++ + 
  XP_028084904.1   6 VDVVPEQLCYIPCNFCNIVLAVSVPSSNLFDIVTVRCGHCSNLLSVNMAAAFQSLSWQDI---Q-APN-YTSQDYRNIDLGS---SSKCNNKMTM 92 
                     66789*********************************************9999999984...1.111.1111122222222...2222222222 PP

           YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        +  n+++e      v+r PekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  XP_028084904.1  93 RPPI-ANTTQER----AVNRTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 160
                     2222.3333333....479****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MSSSSVDVVP EQLCYIPCNF CNIVLAVSVP SSNLFDIVTV RCGHCSNLLS VNMAAAFQSL  60
SWQDIQAPNY TSQDYRNIDL GSSSKCNNKM TMRPPIANTT QERAVNRTPE KRQRVPSAYN  120
QFIKEEIQRI KANNPDISHR EAFSTAAKNW AHFPHIHFGL MLETNNQPKL DEGSGKHLMP  180
RASLLNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.16e-84YABBY family protein