PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028084901.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MYB
Protein Properties Length: 310aa    MW: 35413.6 Da    PI: 7.6629
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028084901.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-172067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
   XP_028084901.1 20 RGPWTLEEDTLLIHYIACHGEGRWNLLAKRSGLKRTGKSCRLRWLNYL 67
                     89********************************************97 PP
2Myb_DNA-binding54.82.2e-1773116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_028084901.1  73 RGNLTPEEQLLILELHSKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 116
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MSSVSKSASS SSDEDVELRR GPWTLEEDTL LIHYIACHGE GRWNLLAKRS GLKRTGKSCR  60
LRWLNYLKPD VKRGNLTPEE QLLILELHSK WGNRWSKIAK HLPGRTDNEI KNYWRTRVQK  120
QARHLKIDPN SAAFQEVIRC FWMPRLIQKI RGSSSPSSVI LSQNLAIASR PLINHSSLPP  180
QVSPQANVYT SETTNNLDHH VKNSSLEHST SPSVSSSESM NISHMTQVSE YPIEAMGNSH  240
DYNTFLKGGC YNVENISYDM ETFNISSVEF ENSIGGCHVS QSNWIDNEFG DSFWNMDELW  300
QFKQLQERGT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.18e-84MYB family protein