PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028084820.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 525aa MW: 57656.3 Da PI: 9.0548

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028084820.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_028084820.1 90 FVCEICNKGFQRDQNLQLHRRGH 112 89*******************88 PP
2	zf-C2H2	12.7	0.00039	166	188	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_028084820.1 166 WKCEKCSKKYAVQSDWKAHSKTC 188 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MSNISGDDGG SFSSGNTCFS QQQKQFNHLN GSNFVPSSST SNSNGSTSQQ QQQEQQPPTV 60 KKRRSLPGNP DPNAEVIALS PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ 120 RTSTEIRKRV YVCPETTCVH HNPARALGDL TGIKKHFSRK HGEKKWKCEK CSKKYAVQSD 180 WKAHSKTCGT KEYKCDCGTI FSRRDSFITH RAFCDALAEE NNKANEGHHG HIPDLITTTT 240 TTNTAPPPMN TTSITLPEFT QLDIKIPIKP IIPPKPVNLS AANGSIFPST TNSNTLFGSP 300 RPPISPSSST LQLSSAVNSS LCSSAAAAMS ATALLQKAAQ MGATASSNMN SPMMQKSFVT 360 SMAPSSFNGM PPYDHQIHRH IQTQNYHHHH EQSQSLLAGV IGGSFATQFN MGRYIGGLNN 420 QNHGFLGNLE ENDSGHNVLH GSTPESRTEL FSSFMGSNGH DDMTTVDYLG IGGTRPRNFH 480 GQQNHGGVEE YEAMSTQQRM QGLSQFQQQQ MSSGQVTCEK SMWNV

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MSNISGDDGG SFSSGNTCFS QQQKQFNHLN GSNFVPSSST SNSNGSTSQQ QQQEQQPPTV  60
KKRRSLPGNP DPNAEVIALS PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ  120
RTSTEIRKRV YVCPETTCVH HNPARALGDL TGIKKHFSRK HGEKKWKCEK CSKKYAVQSD  180
WKAHSKTCGT KEYKCDCGTI FSRRDSFITH RAFCDALAEE NNKANEGHHG HIPDLITTTT  240
TTNTAPPPMN TTSITLPEFT QLDIKIPIKP IIPPKPVNLS AANGSIFPST TNSNTLFGSP  300
RPPISPSSST LQLSSAVNSS LCSSAAAAMS ATALLQKAAQ MGATASSNMN SPMMQKSFVT  360
SMAPSSFNGM PPYDHQIHRH IQTQNYHHHH EQSQSLLAGV IGGSFATQFN MGRYIGGLNN  420
QNHGFLGNLE ENDSGHNVLH GSTPESRTEL FSSFMGSNGH DDMTTVDYLG IGGTRPRNFH  480
GQQNHGGVEE YEAMSTQQRM QGLSQFQQQQ MSSGQVTCEK SMWNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-101	C2H2 family protein