PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028084325.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

FAR1

Protein Properties

Length: 545aa MW: 63231.7 Da PI: 8.8123

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028084325.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.7	3e-21	92	185	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHela 90 fYn+YAk GFs+rksk +++ ++g++ +r + Cs+eg+r ++ + +ek++ ++a tr+gCka+++++ + +k++vt+++ +HnHel+ XP_028084325.1 92 FYNAYAKAKGFSIRKSKFNTN-KEGKVASRLWLCSREGQRLPKYLDriAEKSSASKALTRVGCKAQFRIRYDAdaseGEKYVVTHFVADHNHELV 185 9**************9998.6677***********9988878899999***********9987666689************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MSPAEVKRKC NDYDIPNEVD DIRLVNESWV EPYHGCEAGP SNEEATNMNV KDGGADVKQE 60 MVNNAHRNDM VGDVERVILE QKFDSIEDGE AFYNAYAKAK GFSIRKSKFN TNKEGKVASR 120 LWLCSREGQR LPKYLDRIAE KSSASKALTR VGCKAQFRIR YDADASEGEK YVVTHFVADH 180 NHELVEQHCV MYLRSHRGLN SADKAQAMAM RNVSVKTSQI MDYMVNQSGS YENVGFIRMD 240 LHNHIQVERR AKVEDSDAHG ALVYLCAKLD VSVRFFYKYD VCKDNKLQNL FWADSKSRAD 300 YAKFGDVLIF NSTYRTNTYK KPFVMLAGVT NHFRTTIFAC VLLANKTIDT YTWVLKTFME 360 AMGNKAPVSI LTDGDKAMRE AIRRVFPNTR HRLCNWHLGK NVVSNVHKSG FAHAFKQCMD 420 MEMNEAKFEH GWTRMVKKFG LQTNSWVLET YEKRYMWAEA YMRGHFFAEM KSTQHSESIN 480 AYLNPFLQHK LKLYEFVRHY DRALARIRYN EAGDDAETNN TFSDIDYSIA RYRETWNRVI 540 HPKYI

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MSPAEVKRKC NDYDIPNEVD DIRLVNESWV EPYHGCEAGP SNEEATNMNV KDGGADVKQE  60
MVNNAHRNDM VGDVERVILE QKFDSIEDGE AFYNAYAKAK GFSIRKSKFN TNKEGKVASR  120
LWLCSREGQR LPKYLDRIAE KSSASKALTR VGCKAQFRIR YDADASEGEK YVVTHFVADH  180
NHELVEQHCV MYLRSHRGLN SADKAQAMAM RNVSVKTSQI MDYMVNQSGS YENVGFIRMD  240
LHNHIQVERR AKVEDSDAHG ALVYLCAKLD VSVRFFYKYD VCKDNKLQNL FWADSKSRAD  300
YAKFGDVLIF NSTYRTNTYK KPFVMLAGVT NHFRTTIFAC VLLANKTIDT YTWVLKTFME  360
AMGNKAPVSI LTDGDKAMRE AIRRVFPNTR HRLCNWHLGK NVVSNVHKSG FAHAFKQCMD  420
MEMNEAKFEH GWTRMVKKFG LQTNSWVLET YEKRYMWAEA YMRGHFFAEM KSTQHSESIN  480
AYLNPFLQHK LKLYEFVRHY DRALARIRYN EAGDDAETNN TFSDIDYSIA RYRETWNRVI  540
HPKYI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-79	FAR1 family protein