PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028083698.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 219aa MW: 24916.5 Da PI: 10.3066 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.2 | 5.2e-19 | 16 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie k + qvtfsk r g++K A+EL++LC +e a+i+fs+tgk++ + XP_028083698.1 16 KIEIKNRLQVTFSKHRSGLFKMASELCTLCTVEMAIIVFSPTGKVFSF 63 68889999*************************************988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MAKKPSMGHQ KIKIAKIEIK NRLQVTFSKH RSGLFKMASE LCTLCTVEMA IIVFSPTGKV 60 FSFGHPNVDS IVDQFLTRNP PPNTTTRRLI EAHRNASMRE LNLQLTQVLN ELEVKKRHGE 120 TFDHTRKASQ RQYWWEAPID KLGLHELEQL RNSMIELKKN VTNQANKIQV EGNTNPLPFF 180 LVNGSGIVDP FESKTSHINA SSSTSPNVHN FGYYGHGFF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-45 | M-type_MADS family protein |