PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028083083.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 203aa    MW: 23297.5 Da    PI: 8.0575
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028083083.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.22.8e-301059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_028083083.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFAS 59
                    8***********************************************86 PP
2K-box707.4e-2477156483
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                     ++++sl e+++++l++e+a + k+ie L+  +R+llGedL+s++++eLqq+eqqLe+s++++R+kK+++l+++  +l +k
  XP_028083083.1  77 QTDNSLVEENMQHLRHEAADMAKQIELLEVAKRKLLGEDLGSCTVEELQQIEQQLERSVSRVRAKKEKVLTAENAKLCEK 156
                     566779999***************************************************************98887666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFASS  60
SMQETIQRYQ RHTKDVQTDN SLVEENMQHL RHEAADMAKQ IELLEVAKRK LLGEDLGSCT  120
VEELQQIEQQ LERSVSRVRA KKEKVLTAEN AKLCEKYGLL PRQESNEERE GVPYTESSEI  180
SDVETDLFIG PPEGRIKRSS PQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-74MIKC_MADS family protein