PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028082272.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 862aa MW: 96469.4 Da PI: 7.146 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.7 | 3.1e-06 | 130 | 149 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 Cr+f + G C++GdrC++ H XP_028082272.1 130 TCRDFVA-GRCRRGDRCPYLH 149 7******.************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 862 aa Download sequence |
MSRSGRTCVS KWDQPRLFPG DTEYGIWLQN VGESVHNKES QSGRDCPELA GSTNPELYRV 60 ECNNEDEILE WYGEGCYMTK MSPGLDHWRQ QKYSHFPRNG RGRSDRSRSR SPPHGFKREL 120 GLDGSTAART CRDFVAGRCR RGDRCPYLHQ DRRDHEDRCP EGGLAKNWES SHWRSGASKY 180 STSNDGREYL QSVGRSNNLC SDFIKGRCRT GAYSKYAHNS VASDTGSLKD VFRGKENDRS 240 GHGREHEPHR SSDIPCKFFT AGNCHKGTFC RFSHHGQTVN PYDRSRDDWR RRSKNLDTVE 300 QPDEHLRWRD TTVPDNAKLL KWNEDRNGNV GAHEQGFPAY SRDDRWVRSF NIENRSYGHP 360 INNGKAVDGN DREYLQPKAE TAAAGTSGFE SNGAENWYSD MELSSPWNYG QSSGHVVKEE 420 SCHISQTSHC LSLKETSSRS YEQDMTGEML GQKHQDPAAM LPLISENVCF YSKPSSREED 480 AGYAFSLELR KETSDCAMSS IDQKFSADVL PGQSVDQNDR SSSAVIDPLS RFSAVGQNQQ 540 TFSLHAPRGE SITNVQTQPL FQEDKSLSKP NAGEGNRPEL SSEIPPAQNI VNRQQPSQFI 600 NFSALAQLYG DMKQRSHLGA VPNPTKLMGF VSSFLSNSAG PVRPIAAASS NPNLVIRSVT 660 QYNPLSDNIV LIKNHPDNPL AGLLPNPVEG IVGEKQEVPS RDLFSSLTGG PSGGDQYKVG 720 KSEVELDREC HQLDQLNPVA NCDGEGNNET TAEESKKAQG NGPLEKMNKD GRADEVKKNN 780 DSKGIWVFKF ALVEFVKEML KPKWKEGQIS KESHKTILKK VVDKVIGSIQ GAYIPDSQEK 840 IDNYLSSSKQ KLTQLVEDRM SK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 4e-15 | C3H family protein |