PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028082270.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 884aa MW: 98931.4 Da PI: 7.2246

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028082270.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3.2e-06	130	149	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 Cr+f + G C++GdrC++ H XP_028082270.1 130 TCRDFVA-GRCRRGDRCPYLH 149 7****.**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 884 aa Download sequence
MSRSGRTCVS KWDQPRLFPG DTEYGIWLQN VGESVHNKES QSGRDCPELA GSTNPELYRV 60 ECNNEDEILE WYGEGCYMTK MSPGLDHWRQ QKYSHFPRNG RGRSDRSRSR SPPHGFKREL 120 GLDGSTAART CRDFVAGRCR RGDRCPYLHQ DRRDHEDRCP EGGLAKNWES SHWRSGASKY 180 STSNDGREYL QSVGRSNNLC SDFIKGRCRT GAYSKYAHNS VASDTGSLKD VFRGKENDRS 240 GHGREHEPHR SSDIPCKFFT AGNCHKGTFC RFSHHGQTVN PYDRSRDDWR RRSKNLDTVE 300 QPDEHLRWRD TTVPDNAKLL KWNEDRNGNV GAHEQGFPAY SRDDRWVRSF NIENRSYGHP 360 INNGKAVDGN DREYLQPKAE TAAAGTSGFE SNGAENWYSD MELSSPWNYG QSSGHVVKEE 420 SCHISQTSHC LSLKETSSRS YEQDMTGEML GQKHQDPAAM LPLISENVCF YSKPSSREED 480 AGYAFSLELR KETSDCAMSS IDQKFSADVL PGQSVDQNDR SSSAVIDPLS RFSAVGQNQQ 540 TFSLHAPRGE SITNVQTQPL FQEDKSLSKP NAGEGNRPEL SSEIPPAQNI VNRQQPSQFI 600 NFSALAQLYG DMKQRSHLGA VPNPTKLMGF VSSFLSNSAG PVRPIAAASS NPNLVIRSVT 660 QYNPLSDNIV LIKNHPDNPL AGLLPNPVEG IVGEKQEVPS RDLFSSLTGG PSGGDQYKVG 720 KSEVELDREC HQLDQLNPVA NCDGEGNNET TAEESKKAQG NGPLEKMNKD GRADEVKKNN 780 DSKGIWVFKF ALVEFVKEML KPKWKEGQIS KESHKTILKK VVDKVIGSIQ GAYIPDSQEK 840 IDNYLSSSKQ KLTQLVEVRA NTFCLCSRII LSVACYFDKN IFSL

Sequence ? help Back to Top

Protein Sequence Length: 884 aa Download sequence

MSRSGRTCVS KWDQPRLFPG DTEYGIWLQN VGESVHNKES QSGRDCPELA GSTNPELYRV  60
ECNNEDEILE WYGEGCYMTK MSPGLDHWRQ QKYSHFPRNG RGRSDRSRSR SPPHGFKREL  120
GLDGSTAART CRDFVAGRCR RGDRCPYLHQ DRRDHEDRCP EGGLAKNWES SHWRSGASKY  180
STSNDGREYL QSVGRSNNLC SDFIKGRCRT GAYSKYAHNS VASDTGSLKD VFRGKENDRS  240
GHGREHEPHR SSDIPCKFFT AGNCHKGTFC RFSHHGQTVN PYDRSRDDWR RRSKNLDTVE  300
QPDEHLRWRD TTVPDNAKLL KWNEDRNGNV GAHEQGFPAY SRDDRWVRSF NIENRSYGHP  360
INNGKAVDGN DREYLQPKAE TAAAGTSGFE SNGAENWYSD MELSSPWNYG QSSGHVVKEE  420
SCHISQTSHC LSLKETSSRS YEQDMTGEML GQKHQDPAAM LPLISENVCF YSKPSSREED  480
AGYAFSLELR KETSDCAMSS IDQKFSADVL PGQSVDQNDR SSSAVIDPLS RFSAVGQNQQ  540
TFSLHAPRGE SITNVQTQPL FQEDKSLSKP NAGEGNRPEL SSEIPPAQNI VNRQQPSQFI  600
NFSALAQLYG DMKQRSHLGA VPNPTKLMGF VSSFLSNSAG PVRPIAAASS NPNLVIRSVT  660
QYNPLSDNIV LIKNHPDNPL AGLLPNPVEG IVGEKQEVPS RDLFSSLTGG PSGGDQYKVG  720
KSEVELDREC HQLDQLNPVA NCDGEGNNET TAEESKKAQG NGPLEKMNKD GRADEVKKNN  780
DSKGIWVFKF ALVEFVKEML KPKWKEGQIS KESHKTILKK VVDKVIGSIQ GAYIPDSQEK  840
IDNYLSSSKQ KLTQLVEVRA NTFCLCSRII LSVACYFDKN IFSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	6e-15	C3H family protein