PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028081242.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 419aa    MW: 47260.8 Da    PI: 7.036
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028081242.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.41.6e-128464191374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaalklfsevsP 89 
                     +++lL++cAe +s +dl++a++l++ ls ++sp gd+++Rl++ ft+ L+ rl+r + +   a ++s+++ +       ++ + +++ ++++v+P
  XP_028081242.1  46 MRQLLISCAELISGSDLAAAHRLITILSANSSPFGDSTERLVHQFTKSLSLRLSRYTATATTAARASSSAVNVpdsesdEAVVQSSYLTLNQVTP 140
                     589****************************************************7766666665555554445554335555566666****** PP

            GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                     +++fshltaNqaIlea++g+ ++Hi+Dfdi++G+QWp+L+qa+a+R  + pslRiTg g+    + e+l++tg+rL+kfA++lg++f+f++l+  
  XP_028081242.1 141 FIRFSHLTANQAILEAIDGQAAIHILDFDIMHGVQWPPLMQAIAER-FPLPSLRITGTGQ----DLEMLRRTGDRLSKFAHSLGLRFQFHPLLLF 230
                     *********************************************9.799**********....***************************9544 PP

            GRAS 185 rledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                     +++d      +  + p+E+laVn+vl lhrll+++ +l+     +L+ +k ++P+vv+v+e+ea+hn++ F++rf+ea+++y+alfdslea+lp+
  XP_028081242.1 231 NTDDPtsVAAAVLLLPDETLAVNCVLYLHRLLKDRDKLRL----FLQRIKAMNPRVVTVAEKEANHNHPLFMNRFIEAVDHYTALFDSLEATLPP 321
                     4444311123344678****************77777777....*************************************************** PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371
                     +s+er +vEr+++grei+++va+eg++rr+rhe++++W+ +l+++GF++vpls +a +qaklllr ++ s+gy+++  ++s++lgW+++ L+svS
  XP_028081242.1 322 NSRERLVVERVWFGREIEDIVAAEGDRRRQRHERFRSWEVMLRSSGFNNVPLSPFALSQAKLLLRLHYpSEGYQLHTLNDSFFLGWQNQLLFSVS 416
                     *********************************************************************************************** PP

            GRAS 372 aWr 374
                     +Wr
  XP_028081242.1 417 SWR 419
                     **8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    
MLGSFGSSSR EEEDHPTPTP TPSDAHLFPQ HQQIPPQGFT SPAIHMRQLL ISCAELISGS  60
DLAAAHRLIT ILSANSSPFG DSTERLVHQF TKSLSLRLSR YTATATTAAR ASSSAVNVPD  120
SESDEAVVQS SYLTLNQVTP FIRFSHLTAN QAILEAIDGQ AAIHILDFDI MHGVQWPPLM  180
QAIAERFPLP SLRITGTGQD LEMLRRTGDR LSKFAHSLGL RFQFHPLLLF NTDDPTSVAA  240
AVLLLPDETL AVNCVLYLHR LLKDRDKLRL FLQRIKAMNP RVVTVAEKEA NHNHPLFMNR  300
FIEAVDHYTA LFDSLEATLP PNSRERLVVE RVWFGREIED IVAAEGDRRR QRHERFRSWE  360
VMLRSSGFNN VPLSPFALSQ AKLLLRLHYP SEGYQLHTLN DSFFLGWQNQ LLFSVSSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-124GRAS family protein