PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028080694.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 406aa MW: 45348.9 Da PI: 8.2828

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028080694.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.7e-06	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_028080694.1 58 YVCEICNQGFQRDQNLQMHRRRH 80 9*********************9 PP
2	zf-C2H2	16.2	2.9e-05	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_028080694.1 135 WVCEKCSKGYAVQSDYKAHLKTC 157 58*******************98 PP
3	zf-C2H2	11.1	0.0012	165	183	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ XP_028080694.1 165 DCGRVFSRVESFIEHQDTC 183 9***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MLDNTGSTPG PSSSSDAFTS SENGVCNNKR KRRPAGTPDP DAEVVSLSPK TLLESDRYVC 60 EICNQGFQRD QNLQMHRRRH KVPWKLLKRE SPEVRKRVFV CPEPSCLHHD PCHALGDLVG 120 IKKHFRRKHS NNKQWVCEKC SKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ 180 DTCTVRLIQP DLQALQPACS SRTASSTSRS SDNNNFSIAP LPRLPIPTEP IFLCPERHSS 240 TGNDHHHNLE LQLLPSSSNP YSSRNCDENH ETNLKLSIGS CNQERKHTEA AIEASRMKEG 300 ASEQLKLAMA EKAYAEEARQ QAKRQIELAE LEFANAKRIR QQAQAELEKA QALKEQATKK 360 ISSTILQITC HSCKRHFQAT TSTALADETS LAASYMSSEI TGGEAE

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MLDNTGSTPG PSSSSDAFTS SENGVCNNKR KRRPAGTPDP DAEVVSLSPK TLLESDRYVC  60
EICNQGFQRD QNLQMHRRRH KVPWKLLKRE SPEVRKRVFV CPEPSCLHHD PCHALGDLVG  120
IKKHFRRKHS NNKQWVCEKC SKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ  180
DTCTVRLIQP DLQALQPACS SRTASSTSRS SDNNNFSIAP LPRLPIPTEP IFLCPERHSS  240
TGNDHHHNLE LQLLPSSSNP YSSRNCDENH ETNLKLSIGS CNQERKHTEA AIEASRMKEG  300
ASEQLKLAMA EKAYAEEARQ QAKRQIELAE LEFANAKRIR QQAQAELEKA QALKEQATKK  360
ISSTILQITC HSCKRHFQAT TSTALADETS LAASYMSSEI TGGEAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	34	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-147	C2H2 family protein